PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA19288

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 785aa MW: 90640 Da PI: 6.1165

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA19288	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98	1.1e-30	73	165	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r++tr+gCka+l vk+++ +gkw v+ ++ Tp57577_TGAC_v2_mRNA19288 73 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKMHDsSGKWIVSGFV 156 9*************************************998888545677889*************99****** PP FAR1 83 leHnHelap 91 eHnHel+p Tp57577_TGAC_v2_mRNA19288 157 REHNHELVP 165 *****86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-29	73	165	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-32	289	381	IPR018289	MULE transposase domain
Pfam	PF04434	7.7E-11	557	603	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.991	569	605	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-9	580	607	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence Send to blast
MDNDAVEFDI GLGGEYEEEP IEIEEEDDDE EEEEEDDELD LVESSGAVYF PEAGDLEPSE 60 GMEFESEEAA KAFYNSYARR VGFSTRVSSS RRSRRDGAII QRQFVCAKEG FRNLNEKRTK 120 DREIKRPRTV TRVGCKASLS VKMHDSSGKW IVSGFVREHN HELVPPDQVH CLRSHRQISG 180 SAKTLIDTLQ AAGMGPRRIM SALIKEYGGI SKVGFTEVDC RNYMRNNRHR SLQGDIQLVL 240 DYLRQMHAQN PNFFFAVQGD LDDEDHSITN VFWADPKARL NYTYFGDTVT FDTTYRSNRY 300 RLPFAPFTGV NHHGQPVLFG CAFLINESEA SFVWLFKTWL MAMSGRPPLS ITTDHDSVIQ 360 SAITQVFPST RHRFCKWHIF KQCQEKLSHI FLQFPNFEAE FHKCVNLTDS IDEFESCWSK 420 LVDRYVLREV EWLQAIHSAC RHWVPVYLRD TFFAEMSITQ RSDSMNSYFD GYVNASTSLN 480 QFFKLYEKAL ESRNEKEVRA DYDTMNTLPV LRTPSPMERQ ASELYTRKIF MRFQEELVGT 540 LTFMASKAED DGEVITYNVA KFGEDHKAFN VRFNVLEMKV TCSCQMFEFS GLLCRHILAV 600 FRVTNVLTLP SHYILKRWTR NAKSNVILEE HASDVYTYYL ESHTVRYNTL RHRAFKFVDK 660 GASSPETYDV AKDALQEAAK RVAQVMRKEG RTPISNGKVR SHLLNDENRA NYTSGCQDES 720 LGEHMNKDDM DKHIAKLTNE LECANRKCEV YRSNLLSVLK TVEDHKLELS VKVENIKISM 780 KDDL*

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence Send to blast

MDNDAVEFDI GLGGEYEEEP IEIEEEDDDE EEEEEDDELD LVESSGAVYF PEAGDLEPSE  60
GMEFESEEAA KAFYNSYARR VGFSTRVSSS RRSRRDGAII QRQFVCAKEG FRNLNEKRTK  120
DREIKRPRTV TRVGCKASLS VKMHDSSGKW IVSGFVREHN HELVPPDQVH CLRSHRQISG  180
SAKTLIDTLQ AAGMGPRRIM SALIKEYGGI SKVGFTEVDC RNYMRNNRHR SLQGDIQLVL  240
DYLRQMHAQN PNFFFAVQGD LDDEDHSITN VFWADPKARL NYTYFGDTVT FDTTYRSNRY  300
RLPFAPFTGV NHHGQPVLFG CAFLINESEA SFVWLFKTWL MAMSGRPPLS ITTDHDSVIQ  360
SAITQVFPST RHRFCKWHIF KQCQEKLSHI FLQFPNFEAE FHKCVNLTDS IDEFESCWSK  420
LVDRYVLREV EWLQAIHSAC RHWVPVYLRD TFFAEMSITQ RSDSMNSYFD GYVNASTSLN  480
QFFKLYEKAL ESRNEKEVRA DYDTMNTLPV LRTPSPMERQ ASELYTRKIF MRFQEELVGT  540
LTFMASKAED DGEVITYNVA KFGEDHKAFN VRFNVLEMKV TCSCQMFEFS GLLCRHILAV  600
FRVTNVLTLP SHYILKRWTR NAKSNVILEE HASDVYTYYL ESHTVRYNTL RHRAFKFVDK  660
GASSPETYDV AKDALQEAAK RVAQVMRKEG RTPISNGKVR SHLLNDENRA NYTSGCQDES  720
LGEHMNKDDM DKHIAKLTNE LECANRKCEV YRSNLLSVLK TVEDHKLELS VKVENIKISM  780
KDDL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA19288

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT009656	0.0	CT009656.3 Medicago truncatula chromosome 5 clone mth2-154o18, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024639602.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K3MN40	0.0	A0A2K3MN40_TRIPR; Protein FAR1-related sequence 5-like
STRING	AET01090	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA19288

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]