PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA19177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 138aa MW: 15601.3 Da PI: 9.3434 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.1 | 9.3e-36 | 20 | 107 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkCa+dCv+apyf +q +++fa+vhk++Gasnv++ll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +l Tp57577_TGAC_v2_mRNA19177 20 SCGACKFLRRKCASDCVFAPYFSYDQaSSHFAAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYAL 103 6***********************9978******************************************************** PP DUF260 84 qqql 87 q+q+ Tp57577_TGAC_v2_mRNA19177 104 QHQV 107 **98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.119 | 19 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-34 | 20 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MILKLSLGTK IWKMTGFGSS CGACKFLRRK CASDCVFAPY FSYDQASSHF AAVHKVYGAS 60 NVSRLLSHLP IQNRSDAAIT ISYEALARMQ DPIYGCVAHI YALQHQVISM LFLVPSYFSE 120 LSLKKFRFYI YIYYICH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-33 | 14 | 107 | 5 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-33 | 14 | 107 | 5 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA19177 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC129090 | 1e-116 | AC129090.23 Medicago truncatula clone mth2-14i8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616452.1 | 2e-63 | LOB domain-containing protein 33 | ||||
Swissprot | Q5UG13 | 3e-48 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
Swissprot | Q9LHS8 | 5e-49 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A2K3L287 | 5e-67 | A0A2K3L287_TRIPR; LOB domain-containing protein 33-like (Fragment) | ||||
STRING | GLYMA02G41710.2 | 2e-62 | (Glycine max) | ||||
STRING | AES99410 | 9e-63 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-51 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA19177 |
Publications ? help Back to Top | |||
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