PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA1917 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 310aa MW: 36036.8 Da PI: 4.8128 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.5 | 1.5e-07 | 11 | 54 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k i+n+ r+ +f++Rr+g+ KK + S +ev++i+ +g Tp57577_TGAC_v2_mRNA1917 11 KHIQNEKVRKSSFIQRRKGLTKKVSKFSKNFRVEVCLIVCDGDG 54 689************************************86654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0057 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.236 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-13 | 5 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.5E-9 | 13 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MGRGGGKVTM KHIQNEKVRK SSFIQRRKGL TKKVSKFSKN FRVEVCLIVC DGDGDGKPMT 60 WPQDFLTLQS MLTKYEQQKI ETTPKKFDLQ DYFANKKNMV EGEILNVRKK IVMNKYPTWG 120 RPFNNLEMEQ LRSFVDIVDL KIQACNQRIN MLKNMQQSDQ ANFMQNTARM QNVASENVAS 180 PLSSQPDDLI NPLIDISEMI DFSDLMEWDE IMAQENDLSS HSYSSQDVMH SIPQMQHEFG 240 KLDDLVDKSD QEWATQLEDF DDWAVNKLNN GDGWVKQPYM FECQDFCFLS EIEQQYATLD 300 AFYQPRYGF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA1917 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003595578.1 | 5e-73 | MADS-box transcription factor 5 | ||||
TrEMBL | A0A2Z6MUL0 | 1e-111 | A0A2Z6MUL0_TRISU; Uncharacterized protein | ||||
STRING | AES65829 | 2e-72 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 2e-14 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA1917 |