PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1915
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 294aa    MW: 34154.7 Da    PI: 4.7283
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1915genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.61.3e-071154144
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                              k i+n+  r+ +f++Rr+g+ KK +  S    +ev++i+   +g
  Tp57577_TGAC_v2_mRNA1915 11 KHIQNEKVRKSSFIQRRKGLTKKVSKFSKNFSVEVCLIVCDGDG 54
                              689***********************************987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0029162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.503363IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-13578IPR002100Transcription factor, MADS-box
PfamPF003191.4E-81354IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRGGGKVTL KHIQNEKVRK SSFIQRRKGL TKKVSKFSKN FSVEVCLIVC DGDGDSKPMT  60
WPQDFSTLQS MLTKYEQQKI EMTPKKFDMQ DYFANKKNMV EAEILNVRKK ILMNKYPTWG  120
RPFNKLEMEQ LRSFVDIVDL KIQACNQRIN MLKNMQQSDQ TNFMQNVGSE NVASPLSSQP  180
DDLINPLIDI SEMIDFSDLM EWDEIMAQEN DLSSHSSQMQ HEFGKLDDQV DKSDQEWATQ  240
LEDFDDWAVN KLNNGDGWVK QPYMFECQDF CFLSEIEQQC ATLDAFYQPR YGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1915
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595578.15e-67MADS-box transcription factor 5
TrEMBLA0A2Z6MUL01e-105A0A2Z6MUL0_TRISU; Uncharacterized protein
STRINGAES658292e-66(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-10M-type_MADS family protein