PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18943
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 777aa    MW: 85389 Da    PI: 7.5093
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18943genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.2e-18323423199
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 
                                f+kvl+psd+++ grlvlpk +ae++   +++ e++ l ++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v
  Tp57577_TGAC_v2_mRNA18943 323 FEKVLSPSDAGRIGRLVLPKACAEAFlpPIDQSEGVPLLFQDIKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQFLRLNAGDTV 405
                                99**************************777778999***************9989999999***9.***************** PP

                                EEEE-SSSEE..EEEEE-S CS
                         B3  81 vFkldgrsefelvvkvfrk 99 
                                +F+++++ e+++v++++r+
  Tp57577_TGAC_v2_mRNA18943 406 TFSRIDS-EEKFVLGFRRA 423
                                ***9974.44458888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-20320422IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-28320430IPR015300DNA-binding pseudobarrel domain
CDDcd100175.66E-23321422No hitNo description
SMARTSM010194.8E-21323424IPR003340B3 DNA binding domain
PfamPF023621.4E-15323423IPR003340B3 DNA binding domain
PROSITE profilePS5086310.489323424IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MGVEVCMNKL CKESSIGEWK KGWSLISGGF AKLCNKCGLA YENSVFCDQF HRLEAGWREC  60
NNCKKLIHCG CIVSKSLFEY LDFGGIGCVT CVKASQLCLD TGNANRFAHI TKNNANDRYA  120
EHTDGGLSVE RVGKGNLMQL RKTAEAGETS FWPQAQRDGV FSSIGSKSEE INCRFNKTDT  180
GFLNVMKHSS HLSALTTSEN NRPTWETKSR DESLSLKISL GTSSRNCVLP SAKEIVEGKL  240
EGKASSISQQ GHNSYPILAK QPKTGVTLNL ETNKGMISLP RIGRPPADVK GKNQLLSRYW  300
PRITDQELEK LSGDLKSKIV PLFEKVLSPS DAGRIGRLVL PKACAEAFLP PIDQSEGVPL  360
LFQDIKGNEW TFQFRFWPNN NSRMYVLEGV TPCIQFLRLN AGDTVTFSRI DSEEKFVLGF  420
RRASGSTDTQ DDSTSAHSNG FSTKDTNVSG ATKNLNSLSS FSDLLQSMKG NREPYLNGHS  480
RHLHLGNGTP YWLKTAHCEE AANNGPLQQQ VSVSDKKKTC KIGTKTKRLH IRSEDSLELR  540
LTWEEAQDLL CPPPNVKPNI VQIDDQVFEE YDEPPVFGKG TITNACPSGS PCSASEQLGP  600
NEQENLQRTR KASKKRKIVE KSNSIEEDKL QDLDTLASMA ILGDNLADLD EPTSAGITTK  660
HPRHRDGCTC IVCIQSPSGQ GKHKPTCTCL ACETLKRRSK TLMMRKKKNQ SESEAAAPQN  720
DQTNHSGEAD TSGDASRQDT SNSTDEVSLN GGQKEAVEPS AAGQLDLNCH PDHEDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-603014302131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1695706KRRSKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18943
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616034.20.0B3 domain-containing protein Os07g0679700
RefseqXP_024640355.10.0B3 domain-containing protein Os07g0679700
RefseqXP_024640356.10.0B3 domain-containing protein Os07g0679700
RefseqXP_024640357.10.0B3 domain-containing protein Os07g0679700
TrEMBLA0A2K3P5430.0A0A2K3P543_TRIPR; B3 domain-containing transcription repressor val1-like protein
STRINGXP_004490716.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-172HSI2-like 1