PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA18940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 127aa MW: 14483 Da PI: 9.3772 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00031 | 23 | 43 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 y C C + F+++ L+ H+r Tp57577_TGAC_v2_mRNA18940 23 YLCRVCERAFTSNRALNGHMR 43 56******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.02E-8 | 19 | 49 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-8 | 20 | 45 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.801 | 23 | 50 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0089 | 23 | 45 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.0E-6 | 23 | 45 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 25 | 45 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
LLINFSINST IQTLXXQQQE KPYLCRVCER AFTSNRALNG HMRCHGSKKG TSPFLTCQDA 60 IDLSRFLPPK TYKTRQRSKR FVIDDDVREV AQSLLDMSCG KSLYFDADNH DNNGKRLKLS 120 DEKARC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 79 | RQRSKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA18940 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2Z6M8M7 | 8e-22 | A0A2Z6M8M7_TRISU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15177 | 3 | 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA18940 |