PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1887
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 295aa    MW: 33045 Da    PI: 7.5831
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1887genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30142199258
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                               +Dgy+WrKYGqK+ ++++ pr+Y++C++a gCpvkkkv+rs edp+++++tYegeHnh
  Tp57577_TGAC_v2_mRNA1887 142 RDGYQWRKYGQKVTRDNPSPRAYFKCSFApGCPVKKKVQRSVEDPSILVTTYEGEHNH 199
                               7***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-29135199IPR003657WRKY domain
PROSITE profilePS5081126.326136199IPR003657WRKY domain
SuperFamilySSF1182902.88E-25138199IPR003657WRKY domain
SMARTSM007741.3E-35141201IPR003657WRKY domain
PfamPF031063.8E-25143199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEPTCVDTSL NLNIAPSRND TIVDAVVADQ VLVEELERLS HENKRLNEKL NHMCDNYVAL  60
QKHLSQFSHT NFENELVTQS RKRKAESIEN CMNKFGYAIA ESSTVTTDHH EETTFKHNNI  120
NSPKISKVLV PTDASNTSLY VRDGYQWRKY GQKVTRDNPS PRAYFKCSFA PGCPVKKKVQ  180
RSVEDPSILV TTYEGEHNHL NHQAQIQMSS SCSNQSETTS STYLVPISSP SPKNPSSTLD  240
LVTQRKLIAI EDAQKSSLQQ LLVQQMATSL TRDPNFATAL ATAISGRILD FEKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-211431991974Probable WRKY transcription factor 4
2lex_A4e-211431991974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1887
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1335711e-76AC133571.47 Medicago truncatula clone mth2-10h12, complete sequence.
GenBankCU0196031e-76CU019603.9 M.truncatula DNA sequence from clone MTH2-139F11 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603300.11e-157probable WRKY transcription factor 40 isoform X1
TrEMBLA0A2K3N1Q50.0A0A2K3N1Q5_TRIPR; WRKY transcription factor
STRINGAES735511e-156(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.18e-64WRKY DNA-binding protein 40