PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18756
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 500aa    MW: 57007.7 Da    PI: 8.8349
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18756genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.89.8e-2570160191
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                +fYn+Y+k++GF +r+++ +ks+ +g  t+r+f+C keg r+ +k+  +++ ++raetrtgC+a++ +++++  gk++v ++  
  Tp57577_TGAC_v2_mRNA18756  70 DFYNAYSKTIGFGIRREYGNKSRVDGVLTSRRFTCFKEGIRSVDKRC-HSTAEPRAETRTGCQARMAISLDRkIGKYKVVDFIA 152
                                6******************************************9998.99********************9989********** PP

                       FAR1  84 eHnHelap 91 
                                +HnH+l+p
  Tp57577_TGAC_v2_mRNA18756 153 KHNHPLQP 160
                                *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-2070160IPR004330FAR1 DNA binding domain
PfamPF105519.8E-30280374IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSNYAVATTV VTSQHNVSTT VNGQENMNSS LPNCVDSLVN NIQEQNVQQS IANSEPHLEM  60
EFESEASTYD FYNAYSKTIG FGIRREYGNK SRVDGVLTSR RFTCFKEGIR SVDKRCHSTA  120
EPRAETRTGC QARMAISLDR KIGKYKVVDF IAKHNHPLQP PEHVHMIRSH RRISEAQASQ  180
IVLGDESGLT PKDLHEYISK QAGGIETVGF TREDLKNYLK TKRKQSLKYG EVGALMMYFK  240
QESENPSFFY DFQMDVDELI TNIFWADAQM INDYGYFGDV ITFDTTYKTN KDCRPLGVFV  300
GLNNHRQTVI FGAALLYDET IPSFQWLFET FLKAMGGAKP KTMLTDQDPA MARALSIVMP  360
ETFHGLCTWH IRQNSLRHVN HLYQQSSRFR GDFVILCSNK LQFRGHNQAK LTMKLNIKLQ  420
FKGHNQAKLT MELNIKLQFK GHNQAKFCNK AFLTSILKAE PSLSTVTSSK MRRERFNFKD  480
LTQSDDDGCY LYDGHGLVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18756
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630916.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3LW050.0A0A2K3LW05_TRIPR; Protein FAR1-related sequence 5-like (Fragment)
STRINGXP_004503202.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-83FAR1-related sequence 5