PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1868
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 1758aa    MW: 192574 Da    PI: 6.3471
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1868genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08902943346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +WT eE e++++ ++  G++ +++Ia+ +  ++t  +c+++++k
  Tp57577_TGAC_v2_mRNA1868 902 PWTSEEKEIFLEKFAAIGKD-FRKIASFLD-HKTTADCVEFYYK 943
                               8*****************99.*********.***********98 PP
2Myb_DNA-binding34.54.6e-1110911133347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47  
                                 WT +E   ++++v  +G++ +++Iar++g +R++++ck ++ k 
  Tp57577_TGAC_v2_mRNA1868 1091 EWTDDEKAAFLQGVSSFGKD-FAKIARCVG-TRSREHCKVFFSKT 1133
                                6*****************99.*********.********988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-13886947IPR009057Homeodomain-like
PROSITE profilePS5129315.4898949IPR017884SANT domain
SMARTSM007176.6E-8899947IPR001005SANT/Myb domain
PfamPF002496.9E-6901943IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-5902943IPR009057Homeodomain-like
PROSITE profilePS5129312.49510871138IPR017884SANT domain
SMARTSM007171.3E-710881136IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-1010891138IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-510901132IPR009057Homeodomain-like
CDDcd001679.36E-710911130No hitNo description
PfamPF002491.4E-810911131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1758 aa     Download sequence    Send to blast
MNFHFPLPSP ISNFFPQFNS KSSLSTRLDW RETPRSQVWK VVLLGFNNKD VFVCFWLRAF  60
CGERGEYGFC LLVCAAHAIG LNLMPPEPLP WDRKDFFKER KHERSESLGS VARWRDSSHH  120
RDFNRWGSAD FRRPPGHGKQ GGWHMFSEEP GHGYGVSRSG DKMLEEDSRP SISRGDGRYG  180
RSSRDNRGGP FGQRDWRGHS WEVTNGSPNL SRRPQDMNND QRSVDDSLTY SSQPHSDFVN  240
TWEQHQSKDQ HDKMGGVNGL GTGPRCDREN SLGSIDWKPL KWTRSGSLSS RGSGFSHSSS  300
SRSMAGGDSY EAKPDLQPKN VTAIESHSGE ATACVTSSMP SXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXK PRLNWGEGLA KYEKKKVDVP DPGANKDGSV SSAGNMEPCN  420
MTSPNMVEKS PKATGFSDCA SPATPSSVAC SSSPGVDDKL LGKTANAGND VSNLTDSPAP  480
GFQNHLQKFY LNLDKLDMDS LNNLGSSIAE LVQSDDPSSE DSGLVRSNAI NKLLIWKADI  540
SKVLEMTESE IDLLENQQKS LKSESVDVYQ CPVALGSEEH VEVSQKVIRP VPLEIISSDE  600
PNADKMPPNL CSIHENDKEE DIDSPGSATS KLVEPLPLVK AVSSCDTGGF GILSRDVGTI  660
QSTSMKCLVR CTTGKNVSVS ACNDVNTPTE VKESMDDATY GANLCSSYED TYNSIIASNK  720
EYANRAHGVF AKLVPKECKK LGNMGVSSDL SSHTFIMEKF AEKKRFEKFK ERVIALKFKA  780
LHHLWKEDMR LLSIKKCRPK SHKKNELGVR TTCSSNMKNR SSIRSRFPFP AGNHLSLVPT  840
AEIINFTSKL LSESQPQIQR NTLRMPALIL DEKEKMVTKF ISSNGLVEDP LAIEKERDMI  900
NPWTSEEKEI FLEKFAAIGK DFRKIASFLD HKTTADCVEF YYKNHKSECF EKLKRKDVGK  960
LGKSFSAKTN LMASGNKRMR SGRILLGGYG NAKASRAEDS NIERSNSFDI LGDERETAAA  1020
ADVLAGICGS LSSEAMSSCI TSSIDPVDGN KERKFLRGNP LCKQPLVHDI SQNAEDETCS  1080
DESCGEVDVS EWTDDEKAAF LQGVSSFGKD FAKIARCVGT RSREHCKVFF SKTRKVLGLD  1140
LSHPIPGIVE SALNDDANGG ESDTDDACVV EAGSVVDADK SGNKTDEDLP SDALNTFHDE  1200
SNPMEARSPS AELNESREIS ETEVHLENLD VASNVCAIKV ESKLGSDGSG VDLGKTDKSG  1260
SVNEVGLDAV RESISASGVT EARECRSVAV DRLDYEGSSG IFGNGVDRER ASAPQCVDDR  1320
DDKHEADAGI VVELKNCVLE SSTAANISFS PVVNSYSGLS FGSENKRVSF GKPHTSALST  1380
NDPRSTVNSF FLKACTSQCE KTVNQDRLSS TCDIQGGRDM RCHSSGSNGD HQLPLPGSHV  1440
ETVSVLQGYP MQVPIKKEVD GDVNCCSSAT DLPLLPQKIK QTDDHSKTSW HSSDAEKTSG  1500
NGDVKLKLFG TILTNPSSTQ KPNLITKRSE ENGTGHPKLS NKSSNLKFTG HQNSDGNSKI  1560
LKFDHSDYAG LENVPVMSYA YWQGNGIQSI QPGLSSLPDS SFLLAKYPAA FSNYPIPSSN  1620
LEQQPLQRHL TGSSSFIARD NNCSNAMLDY QMFRSRDGPQ VQPFIVDVKH RQDIFSEMQR  1680
RNSFEAISSL QQQGRGMMGM NGVGRPGILV GASCSGVSDP VAAIKMHYSN SDNKYGGQNG  1740
SIVRDDESWG GKGDLGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C1e-17860951494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D1e-17860951494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1868
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1260150.0AC126015.41 Medicago truncatula clone mth2-13l2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591951.20.0uncharacterized protein LOC11405402
TrEMBLG7I9K50.0G7I9K5_MEDTR; Myb DNA-binding domain protein
STRINGAES856970.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49863352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-149MYB family protein