PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18662
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 796aa    MW: 92117.9 Da    PI: 7.6071
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18662genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.91e-2043118190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                kfY +YA+++GF+vr+ + ++s++ng++ +r++vCskeg++ +              +rtgC a ++v+++++gkw+v++++++
  Tp57577_TGAC_v2_mRNA18662  43 KFYMSYANRMGFKVRIGQLYRSRTNGSVSSRRYVCSKEGHQLS--------------SRTGCPAFIRVQLNDSGKWVVDHFHKD 112
                                6**************************************8765..............699************************ PP

                       FAR1  85 HnHela 90 
                                HnH+l 
  Tp57577_TGAC_v2_mRNA18662 113 HNHSLE 118
                                ***996 PP
2FAR160.55.2e-19198272189
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +fY+++A  +GF +r+ +  +sk++g it+r+fvCskeg++++              +r+gC+a l++k++ +gkw+v++le++
  Tp57577_TGAC_v2_mRNA18662 198 QFYHAHAAYLGFGIRIGQLFRSKNDGLITSRRFVCSKEGFQHP--------------SRVGCRAYLRIKRQPSGKWVVDRLEKD 267
                                6***************************************999..............4899*********************** PP

                       FAR1  85 HnHel 89 
                                HnH+l
  Tp57577_TGAC_v2_mRNA18662 268 HNHDL 272
                                ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1643118IPR004330FAR1 DNA binding domain
PfamPF031014.1E-15198272IPR004330FAR1 DNA binding domain
PfamPF105513.4E-25371464IPR018289MULE transposase domain
PfamPF044345.0E-8647680IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.115647683IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-6658685IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MIVKEHPVGT ELVMSNAIGD EEIDFSCDPY IGLEFFNADD ALKFYMSYAN RMGFKVRIGQ  60
LYRSRTNGSV SSRRYVCSKE GHQLSSRTGC PAFIRVQLND SGKWVVDHFH KDHNHSLENE  120
SENFAPTLQS NGAAAIDSST TEVTRRPRKK KIEVANDEPI CPFGVIDFKR LRKEELEGQA  180
RIEPHVGQEF NTPNEAYQFY HAHAAYLGFG IRIGQLFRSK NDGLITSRRF VCSKEGFQHP  240
SRVGCRAYLR IKRQPSGKWV VDRLEKDHNH DLGLEKEHKT KILPASNILT EVNTELVNDD  300
IFRIDNYPVL RGGRQNHIRS DWYNMLLEYF QSKQAEDTGF FYSMEVDNGN CMSIFWADGR  360
SRYSCSQFGD VLIVDTSYRK SVYMVPFSTF VGVNHHKQPV LLGCALIADE SEESFTWLFQ  420
TWLRAMSGRQ PLSVIADQDV PIQRAIAKVF PVTYHRFSLW QINAKEQELA GLMGNVFTKD  480
YEKCVYQSQT VDEFDTAWNA LLIKYGLKDN TWLKEMYEKR ASWVPFYLKG TFCAGIPMKE  540
SMESFFGGLL NGQTPLVEFI PRYERGLERR REGERKEDFD TSNFQPFLQT KEPIEEQCRR  600
LYTLAIFKIF QKELLQCYSY LGFKIYEEGP LSRYLVRKCG HDDMEKYVVT FNASNLDTSC  660
SCQLFEYEGV LCRHVLRVFQ ILELREVPSR YILHRWTRNA EDGVFPDRES WSSSQELKSL  720
MLWSLRETAS KYIDAGASSI EKYKLAYEIL REGGRKLCKI NFLACVVYFG CNFAPLIKYH  780
LLSILVVLHL NTCVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150RRPRKKK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18662
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1620300.0AC162030.8 Medicago truncatula clone mth2-178b21, complete sequence.
GenBankAC1691260.0AC169126.2 Medicago truncatula chromosome 2 BAC clone mth2-77e4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632090.10.0protein FAR1-RELATED SEQUENCE 12 isoform X2
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A2K3P2T10.0A0A2K3P2T1_TRIPR; Protein FAR1-related sequence 7-like
STRINGXP_004486100.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]