PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA18374 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 249aa MW: 27758.3 Da PI: 8.1782 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 90.3 | 1.8e-28 | 46 | 99 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++keClkNhA s+Gg+a+DGC+Ef+p+ +eeg+++ kCaAC CHRnFHR+e++ Tp57577_TGAC_v2_mRNA18374 46 SNFKECLKNHASSIGGYAIDGCCEFLPA-SEEGSIEFYKCAACSCHRNFHRKETV 99 689************************9.8889*******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.8E-25 | 47 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.9E-24 | 48 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-17 | 48 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.976 | 48 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.88E-17 | 175 | 246 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-27 | 178 | 246 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.0E-24 | 185 | 241 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEIEEKNDEI VMSTKADTVT INSSRMKTST QVEKSPVYVQ NNSIKSNFKE CLKNHASSIG 60 GYAIDGCCEF LPASEEGSIE FYKCAACSCH RNFHRKETVV VPEDVTPLLF NNPCQLSPST 120 PFKAYYHTSN GNHHVTRASR GTGTTLALPS SDGAHISRGG AEENVHVHHD LEHIQGCGEG 180 SSNSKKRFRT KFTTKQKEMM LDFAITLGWK IQKKDGNIVE EFCKQIGVQR HVFNIWIHNN 240 KHTLGKMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-19 | 186 | 243 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA18374 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003596393.2 | 2e-70 | zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2K3PD95 | 0.0 | A0A2K3PD95_TRIPR; ZF-HD homeobox-like protein | ||||
STRING | AES66644 | 7e-70 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-45 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA18374 |