PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA1833 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 177aa MW: 19932.9 Da PI: 6.6419 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.1 | 1.3e-42 | 18 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+ Tp57577_TGAC_v2_mRNA1833 18 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQK 102 7************************************************************************************ PP DUF260 86 qleqlkaelallkee 100 q+++l+++la++++e Tp57577_TGAC_v2_mRNA1833 103 QVSELQTQLAKAQAE 117 ***********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.898 | 17 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-42 | 18 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MFYSSRYHTP DQNRDISPCA ACKILRRRCV EKCVLAPYFP PTDPLKFTIA HRVFGASNII 60 KFLQELPEPQ RADAVSSMVY EANARIRDPV YGCAGAICQL QKQVSELQTQ LAKAQAEIVN 120 MHCQQANLVA LICMEMSNQS SPQDHNMIIN QPQPHVDMSC FLEDNNFGSA WEPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-42 | 17 | 125 | 10 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-42 | 17 | 125 | 10 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA1833 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144484 | 1e-145 | AC144484.5 Medicago truncatula clone mth2-30o16, complete sequence. | |||
GenBank | AC152818 | 1e-145 | AC152818.17 Medicago truncatula clone mth2-85g12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591977.1 | 1e-111 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 4e-71 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2K3PP50 | 1e-117 | A0A2K3PP50_TRIPR; LOB domain-containing protein | ||||
STRING | AES62228 | 1e-110 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-73 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA1833 |