PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 187aa    MW: 20504.5 Da    PI: 6.1348
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18280genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY44.23.9e-141362358
                               EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                       WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                               sYYrCt  gC+vkk++ersa++ +vv + Yeg+H h
  Tp57577_TGAC_v2_mRNA18280  1 SYYRCTAIGCEVKKRIERSATEASVVLTSYEGNHIH 36
                               8*********************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.099139IPR003657WRKY domain
SMARTSM007749.6E-6138IPR003657WRKY domain
PfamPF031062.0E-8136IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-11139IPR003657WRKY domain
SuperFamilySSF1182906.54E-10139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
SYYRCTAIGC EVKKRIERSA TEASVVLTSY EGNHIHYSPE RMHAANFGMM HNPSGFQEQI  60
HQHQNITSGV GDAVVGNQVA MSQYQQYQQF LDQNQNERQQ QQPVPSLLYN NDYNNSFNTA  120
PPVSVVNSAD NFMDSSASFG GLLQNQVNYG EDNLVRNHGG LLQDMIVPMK GGARAGVRVG  180
DGTSST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609797.21e-71probable WRKY transcription factor 23
TrEMBLA0A2K3PDB01e-120A0A2K3PDB0_TRIPR; WRKY transcription factor
STRINGAES919945e-71(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2119334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.14e-13WRKY DNA-binding protein 48