PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA18280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 187aa MW: 20504.5 Da PI: 6.1348 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 44.2 | 3.9e-14 | 1 | 36 | 23 | 58 |
EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 sYYrCt gC+vkk++ersa++ +vv + Yeg+H h Tp57577_TGAC_v2_mRNA18280 1 SYYRCTAIGCEVKKRIERSATEASVVLTSYEGNHIH 36 8*********************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 16.099 | 1 | 39 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.6E-6 | 1 | 38 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-8 | 1 | 36 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.1E-11 | 1 | 39 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.54E-10 | 1 | 39 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
SYYRCTAIGC EVKKRIERSA TEASVVLTSY EGNHIHYSPE RMHAANFGMM HNPSGFQEQI 60 HQHQNITSGV GDAVVGNQVA MSQYQQYQQF LDQNQNERQQ QQPVPSLLYN NDYNNSFNTA 120 PPVSVVNSAD NFMDSSASFG GLLQNQVNYG EDNLVRNHGG LLQDMIVPMK GGARAGVRVG 180 DGTSST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA18280 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003609797.2 | 1e-71 | probable WRKY transcription factor 23 | ||||
TrEMBL | A0A2K3PDB0 | 1e-120 | A0A2K3PDB0_TRIPR; WRKY transcription factor | ||||
STRING | AES91994 | 5e-71 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21193 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 4e-13 | WRKY DNA-binding protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA18280 |