PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18247
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 385aa    MW: 43813.9 Da    PI: 5.0496
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18247genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.98.1e-1487159274
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdg 74 
                                f + Y+++ GFsvrksk  ++  +ge  ++tfvCs+eg+re++  + ++++r++r et++gC+ak++++  +d+
  Tp57577_TGAC_v2_mRNA18247  87 FNCWYSRMNGFSVRKSKVGRN-SKGEKLQQTFVCSNEGYREDKGLNtKSRKREPRRETKCGCEAKFRISAADDS 159
                                5567*************9999.67779***************998846678889**************998644 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-1287159IPR004330FAR1 DNA binding domain
PfamPF105517.5E-31259350IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
YEDEHEGNGD EDGSGDDSGG EYGDLSGDGD GDGSEYSSSE ESDENNSTED EITIDGLTDI  60
LKIDMKNISI DDVSRYDFCD LEVAYQFNCW YSRMNGFSVR KSKVGRNSKG EKLQQTFVCS  120
NEGYREDKGL NTKSRKREPR RETKCGCEAK FRISAADDSQ IQSFRKVGIK TCQVFGSFAN  180
NSGGYHKIGF IKKDLYNQVG KQKRQQSSDA STALKFLKDV GSKDPLMFVK HTIDNEGRLQ  240
HLFWCDGESR LNYRVFGDVL AFDATYRKIK YMCPFVVFSG VNHHNQIVFA TALVSKENEE  300
TYVWLLEQFM EAMEGKMPIY VITDGDLAMK NAIRRVFPRA HHRLCAWHLL CNTISNVGIP  360
DVMPYLKKCM LGDIEVSRFE ETWDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18247
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006603498.11e-130protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2Z6NML71e-156A0A2Z6NML7_TRISU; Uncharacterized protein
STRINGGLYMA18G39530.21e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-41FAR1-related sequence 5