PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA18247 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 385aa MW: 43813.9 Da PI: 5.0496 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.9 | 8.1e-14 | 87 | 159 | 2 | 74 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdg 74 f + Y+++ GFsvrksk ++ +ge ++tfvCs+eg+re++ + ++++r++r et++gC+ak++++ +d+ Tp57577_TGAC_v2_mRNA18247 87 FNCWYSRMNGFSVRKSKVGRN-SKGEKLQQTFVCSNEGYREDKGLNtKSRKREPRRETKCGCEAKFRISAADDS 159 5567*************9999.67779***************998846678889**************998644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.9E-12 | 87 | 159 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.5E-31 | 259 | 350 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
YEDEHEGNGD EDGSGDDSGG EYGDLSGDGD GDGSEYSSSE ESDENNSTED EITIDGLTDI 60 LKIDMKNISI DDVSRYDFCD LEVAYQFNCW YSRMNGFSVR KSKVGRNSKG EKLQQTFVCS 120 NEGYREDKGL NTKSRKREPR RETKCGCEAK FRISAADDSQ IQSFRKVGIK TCQVFGSFAN 180 NSGGYHKIGF IKKDLYNQVG KQKRQQSSDA STALKFLKDV GSKDPLMFVK HTIDNEGRLQ 240 HLFWCDGESR LNYRVFGDVL AFDATYRKIK YMCPFVVFSG VNHHNQIVFA TALVSKENEE 300 TYVWLLEQFM EAMEGKMPIY VITDGDLAMK NAIRRVFPRA HHRLCAWHLL CNTISNVGIP 360 DVMPYLKKCM LGDIEVSRFE ETWDE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA18247 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006603498.1 | 1e-130 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2Z6NML7 | 1e-156 | A0A2Z6NML7_TRISU; Uncharacterized protein | ||||
STRING | GLYMA18G39530.2 | 1e-127 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3265 | 7 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-41 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA18247 |