PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA18219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | TCP | ||||||||
Protein Properties | Length: 295aa MW: 31951.6 Da PI: 9.1255 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 27 | 1.4e-08 | 81 | 138 | 48 | 101 |
TCP 48 ieWLlqqakpaikeltgtssssasec...........eaesssssasnsssgkaaksaakskksq 101 i WLl+ a+pai+++tgt++ +a ++ + s++++++++++++++kk++ Tp57577_TGAC_v2_mRNA18219 81 IRWLLEHAEPAIIAATGTGTVPAIAMsvngtlkipttS-------PSKEQEPQQSEDSPEKKKRK 138 99****************77777333322212211111.......11111112222222111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-5 | 81 | 142 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSNEASRNID LTLGDPKEEP ETEDGSAMPV AMQMNQAQAQ VQAQAQAQAQ QQPLQKRAST 60 KDRHTKVEGR GRRIXXXXXX IRWLLEHAEP AIIAATGTGT VPAIAMSVNG TLKIPTTSPS 120 KEQEPQQSED SPEKKKRKRP SNSAYVDIND SVSVSAGLIT TSNINQNLTA TAIIPQQTAI 180 PLPQNMVPVW AIPSNAVVSG GNAFFMVPTN QPQFFTLARP ITGFVSSMVR PVIQLQQQAS 240 TSSNTCTTSP LMKSPATATV MAPSTAATTT TQMLRDFSLE IYDRQELQLL RERN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 139 | EKKKRKRP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00638 | PBM | Transfer from Lj0g3v0004489 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA18219 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510891.1 | 1e-143 | transcription factor TCP9 | ||||
Swissprot | O64647 | 8e-53 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A2K3PPV2 | 1e-175 | A0A2K3PPV2_TRIPR; Transcription factor TCP9-like protein | ||||
STRING | XP_004510891.1 | 1e-143 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-53 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA18219 |