PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18219
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 295aa    MW: 31951.6 Da    PI: 9.1255
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18219genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP271.4e-088113848101
                        TCP  48 ieWLlqqakpaikeltgtssssasec...........eaesssssasnsssgkaaksaakskksq 101
                                i WLl+ a+pai+++tgt++ +a ++           +        s++++++++++++++kk++
  Tp57577_TGAC_v2_mRNA18219  81 IRWLLEHAEPAIIAATGTGTVPAIAMsvngtlkipttS-------PSKEQEPQQSEDSPEKKKRK 138
                                99****************77777333322212211111.......11111112222222111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-581142IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSNEASRNID LTLGDPKEEP ETEDGSAMPV AMQMNQAQAQ VQAQAQAQAQ QQPLQKRAST  60
KDRHTKVEGR GRRIXXXXXX IRWLLEHAEP AIIAATGTGT VPAIAMSVNG TLKIPTTSPS  120
KEQEPQQSED SPEKKKRKRP SNSAYVDIND SVSVSAGLIT TSNINQNLTA TAIIPQQTAI  180
PLPQNMVPVW AIPSNAVVSG GNAFFMVPTN QPQFFTLARP ITGFVSSMVR PVIQLQQQAS  240
TSSNTCTTSP LMKSPATATV MAPSTAATTT TQMLRDFSLE IYDRQELQLL RERN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132139EKKKRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00638PBMTransfer from Lj0g3v0004489Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18219
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510891.11e-143transcription factor TCP9
SwissprotO646478e-53TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A2K3PPV21e-175A0A2K3PPV2_TRIPR; Transcription factor TCP9-like protein
STRINGXP_004510891.11e-143(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-53TCP family protein