PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA18189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ARR-B | ||||||||
Protein Properties | Length: 371aa MW: 41615.6 Da PI: 6.176 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 52.7 | 9.4e-17 | 179 | 230 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r+ Wt +LH++F++av+ G++ A Pkti elm+v+gL e v+ L kYR Tp57577_TGAC_v2_mRNA18189 179 RRRTWTDDLHRKFLDAVQTA-GIN-APPKTIFELMDVEGLKKESVRNYLKKYRQ 230 699****************9.776.****************************6 PP | |||||||
2 | Response_reg | 42.7 | 2.9e-15 | 23 | 131 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 vl+vd + + r ++ + l + gy eva+a+ ++eal ++ ek+ ++l+l+ ++p+m+ +el+ ++++++ +p ++t++++ Tp57577_TGAC_v2_mRNA18189 23 VLVVDANSACRAVISKSLLSLGY-EVATATLASEALSIIGEKKneINLVLVEAQLPDMEIYELVAKMKSSN--IPSFIMTSYDD 103 89*********************.***************776667***********************977..89889997777 PP .HHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 83 .eedalealkaGakdflsKpfdpeelvk 109 +++al+ Gak + Kp+ +++l + Tp57577_TGAC_v2_mRNA18189 104 dILSITQALHIGAKWSFRKPVRISDLQQ 131 588999****************999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.8E-20 | 19 | 134 | No hit | No description |
SuperFamily | SSF52172 | 4.7E-19 | 20 | 138 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.2E-5 | 21 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 26.524 | 22 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.4E-11 | 23 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 7.91E-13 | 24 | 136 | No hit | No description |
SuperFamily | SSF46689 | 6.54E-9 | 176 | 232 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 177 | 231 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.3E-13 | 179 | 230 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MEFNMPQLAV PRIYTGPVAG VKVLVVDANS ACRAVISKSL LSLGYEVATA TLASEALSII 60 GEKKNEINLV LVEAQLPDME IYELVAKMKS SNIPSFIMTS YDDDILSITQ ALHIGAKWSF 120 RKPVRISDLQ QLWRFAVWNR FERAFCEEVF YYWWPEVVTN GKAQESFDNK DTIVLLKTRR 180 RTWTDDLHRK FLDAVQTAGI NAPPKTIFEL MDVEGLKKES VRNYLKKYRQ SMNLHASPMG 240 QHVNGDVSLN KKSRGKRSLS LGSQGVTDNP AFNQKDLSNF VPASEIISQV VNTADGKVSN 300 AGQQLNFSTL LAFNMSDQFF PALPIALLPI EKNEKIDEVY NAKESQMFTD EDLKMWLSTI 360 SDNVTQDAVA * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA18189 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510876.1 | 1e-147 | two-component response regulator ARR14 isoform X2 | ||||
TrEMBL | A0A2K3NX21 | 0.0 | A0A2K3NX21_TRIPR; Two-component response regulator ARR2-like protein | ||||
STRING | XP_004510871.1 | 1e-143 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14362 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 5e-24 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA18189 |