PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1817
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 475aa    MW: 54271.9 Da    PI: 6.0008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1817genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2821.7e-86784721374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lLl+ A+ v+++++    + L+ l +++s +gd++qR++ayf  +L a+l+ + s  y+ l  ++t     +ee+ a++ ++
  Tp57577_TGAC_v2_mRNA1817  78 LIHLLLTTATSVDENKFDSSLENLTDLYQIVSLTGDSVQRVVAYFSDGLTAKLLTKKSPFYEMLMEEPT----IDEEFLAFTDLY 158
                               689****************************************************99999998877777....6899999999** PP

                      GRAS  86 evsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetge 163
                                vsP+++f+h+taNq Ilea+e+e     + +H+iDfd+s+G+QWp+L+q+L++++  +++ slRiTg+g+    + ++l+et++
  Tp57577_TGAC_v2_mRNA1817 159 RVSPYYQFAHFTANQVILEAFEKEeeknnRSIHVIDFDVSYGFQWPCLIQSLSEKAtsGNKISLRITGFGK----NLKQLQETES 239
                               **********************9988877889**********************99856667*********....99******** PP

                      GRAS 164 rLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                               rL +fA+++ ++ fef+ l    l   ++ +Lr k++E++aVnlv  l +l     +l + ++++L++v sl+P ++++veqe +
  Tp57577_TGAC_v2_mRNA1817 240 RLVSFAKSFcNIVFEFQGL----LRGSRVINLRKKKNETVAVNLVSYLNKLT----CLMK-ITDTLEFVHSLNPSIIILVEQEGS 315
                               *******9559*******8....77778899*******************97....5555.688*******************99 PP

                      GRAS 248 h.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr............erhetlekWrerl 319
                                  s++Fl rf+++l+y++a+fdsl+  lp es er  +E++l+g++i+ ++ ++ +  +            ++ e++e+W+ r+
  Tp57577_TGAC_v2_mRNA1817 316 KnPSTTFLSRFTDTLHYFAAMFDSLDDCLPLESIERLRIEKKLFGKQIKTMLNNNYDVDNhdafgfgggvecAKYEKMETWKTRM 400
                               956889**********************************************99865432111122222222689********** PP

                      GRAS 320 eeaGFkpvplsekaakqaklllrkvk.sdgyrveee...............sgslv.lgWkdrpLvsvSaWr 374
                               e+ GF  +++s+k   qaklll++       + eee               +g ++ lgW++r L++vSaW+
  Tp57577_TGAC_v2_mRNA1817 401 ENHGFVGIKMSSKCLIQAKLLLKMRTnYSPLQFEEEtgagggggfrvserdDGKAIsLGWQNRFLLTVSAWQ 472
                               ***********************9874444556655666666666666667777777**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.19252435IPR005202Transcription factor GRAS
PfamPF035145.8E-8478472IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEDSEEDELL NLSLSFNRER KKKGKIITSR ENNNVCSTKE RNPYEGYEGK IFRLLEMREQ  60
MIRKNSLNNI EDSNGLPLIH LLLTTATSVD ENKFDSSLEN LTDLYQIVSL TGDSVQRVVA  120
YFSDGLTAKL LTKKSPFYEM LMEEPTIDEE FLAFTDLYRV SPYYQFAHFT ANQVILEAFE  180
KEEEKNNRSI HVIDFDVSYG FQWPCLIQSL SEKATSGNKI SLRITGFGKN LKQLQETESR  240
LVSFAKSFCN IVFEFQGLLR GSRVINLRKK KNETVAVNLV SYLNKLTCLM KITDTLEFVH  300
SLNPSIIILV EQEGSKNPST TFLSRFTDTL HYFAAMFDSL DDCLPLESIE RLRIEKKLFG  360
KQIKTMLNNN YDVDNHDAFG FGGGVECAKY EKMETWKTRM ENHGFVGIKM SSKCLIQAKL  420
LLKMRTNYSP LQFEEETGAG GGGGFRVSER DDGKAISLGW QNRFLLTVSA WQSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-527147112378Protein SCARECROW
5b3h_A6e-527147111377Protein SCARECROW
5b3h_D6e-527147111377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1817
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591993.10.0protein SCARECROW
TrEMBLG7IAF80.0G7IAF8_MEDTR; GRAS family transcription factor
STRINGAES622440.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-52GRAS family protein