PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA18129

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 692aa MW: 79688.1 Da PI: 6.7708

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA18129	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.7	5.3e-20	83	166	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 ++Y YAkevGF vr+++s +++++e + + ++Cs +g+++ ++ + + r+etrtgC a++++ + ++++w+++++ le Tp57577_TGAC_v2_mRNA18129 83 NYYVCYAKEVGFCVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----SFRKETRTGCPAMIRMGLVESQRWRIHEVTLE 161 69***************************************9988.....8999************************ PP FAR1 85 HnHel 89 HnH l Tp57577_TGAC_v2_mRNA18129 162 HNHIL 166 *87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-17	83	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-29	286	379	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.778	573	609	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-6	584	611	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MMLEFQTQNL VTIDAAVDSQ PPREEEQEQH LKMDDTSLYC DQIPDADDVL IELDCQNDPS 60 EGRKEFLAPA SRMEFESYDD AYNYYVCYAK EVGFCVRVKN SWFKRNSREK YGAVLCCSSQ 120 GFKRIKDVNS FRKETRTGCP AMIRMGLVES QRWRIHEVTL EHNHILGATI HKSIKNVGIG 180 TKKKLLPSCS TAEVQTVKLY RALVIDAGGN GNSNSNARDN KTFSEYSNEL NLKKGDVQTI 240 YNFLCRMQLT NPNFFYLMDF NDEGHLRNVL WVDARSKTAC GYFGDVIYFD NTYLSNKYEI 300 PLVAFVGINH HGQTVLLGCG LLAGETIESY TWLFRTWVMC MSGCSPQTII TDRCRALQIA 360 IAEIFPKSHH CFGLSLIMKK VPEKLGGLHN YDAIRKALIK AVYETLKVIE FEAAWGVMIH 420 CFGVSDHEWL RSLYEDRVHW APVYLKDKFF GGMAAARPGE SVCPFFDKYV HKQTPLKEFL 480 DKYELALHQK YKEESLADIE SRSSSPLLIT KCSFELQLSR MYTKEIFTKF QFEVGEMFSC 540 FGTTQLHVDG PIIIFLVKER VLTDGNRREI KDFEVLYNRS AGEVRCICCC FNFYGYLCRH 600 ALCVLNFNGV EEIPPKYILS RWKKDYKRLY IPDHNFGSSD DTDRIHRSNQ LFRSALQVVE 660 EGILSVDHYN VALQAFEESF IKARDVEQRN E*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MMLEFQTQNL VTIDAAVDSQ PPREEEQEQH LKMDDTSLYC DQIPDADDVL IELDCQNDPS  60
EGRKEFLAPA SRMEFESYDD AYNYYVCYAK EVGFCVRVKN SWFKRNSREK YGAVLCCSSQ  120
GFKRIKDVNS FRKETRTGCP AMIRMGLVES QRWRIHEVTL EHNHILGATI HKSIKNVGIG  180
TKKKLLPSCS TAEVQTVKLY RALVIDAGGN GNSNSNARDN KTFSEYSNEL NLKKGDVQTI  240
YNFLCRMQLT NPNFFYLMDF NDEGHLRNVL WVDARSKTAC GYFGDVIYFD NTYLSNKYEI  300
PLVAFVGINH HGQTVLLGCG LLAGETIESY TWLFRTWVMC MSGCSPQTII TDRCRALQIA  360
IAEIFPKSHH CFGLSLIMKK VPEKLGGLHN YDAIRKALIK AVYETLKVIE FEAAWGVMIH  420
CFGVSDHEWL RSLYEDRVHW APVYLKDKFF GGMAAARPGE SVCPFFDKYV HKQTPLKEFL  480
DKYELALHQK YKEESLADIE SRSSSPLLIT KCSFELQLSR MYTKEIFTKF QFEVGEMFSC  540
FGTTQLHVDG PIIIFLVKER VLTDGNRREI KDFEVLYNRS AGEVRCICCC FNFYGYLCRH  600
ALCVLNFNGV EEIPPKYILS RWKKDYKRLY IPDHNFGSSD DTDRIHRSNQ LFRSALQVVE  660
EGILSVDHYN VALQAFEESF IKARDVEQRN E*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA18129

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135102	0.0	AC135102.16 Medicago truncatula clone mth2-8m3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027192103.1	0.0	uncharacterized protein LOC101503771
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2Z6N3Y3	0.0	A0A2Z6N3Y3_TRISU; Uncharacterized protein
STRING	XP_004486559.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA18129

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]