PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA18120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 751aa MW: 86876 Da PI: 5.8688 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.9 | 1.4e-22 | 100 | 184 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 ++Yn+YA+e+GF +r+++s +++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ +++ w+v++++le Tp57577_TGAC_v2_mRNA18120 100 NYYNSYAREIGFAIRVKSSWAKRNSKEKRGAVLCCNCEGFKTIKEAN-----SHRKETRTGCLAMIRLRLVESNMWRVDEVKLE 178 69****************************************99888.....999***************************** PP FAR1 85 HnHela 90 HnH++ Tp57577_TGAC_v2_mRNA18120 179 HNHSFD 184 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.6E-20 | 100 | 184 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.6E-29 | 305 | 398 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.767 | 633 | 669 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.3E-6 | 644 | 671 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MSSGDTVCSL NDKDLCLNPN LDITIDEGSP NTEQLLEVVD EGNELENGCS QLFGLDGSEH 60 ENGRDETTVV DSHNGESQGK KDYTQPVVGM EFETYDDAYN YYNSYAREIG FAIRVKSSWA 120 KRNSKEKRGA VLCCNCEGFK TIKEANSHRK ETRTGCLAMI RLRLVESNMW RVDEVKLEHN 180 HSFDPERAQN SKSHKRTDSG TKRKVEPTLD VEVRTIKLYR PPTVDASGYG SSNSNEGGTS 240 NNVKFSRSLK LKKGDAKLIS NYFCHCQLTS PNFFYVMDLN DDGQLRNIFW IDSRSRSAFN 300 YFGDVVAFDS TYLSNNYEIP LVAFVGVNHH GQSVLLGCGM LADETFETYI WLFRAWLTSM 360 SGRPPQTIVT NQSKTVRSAI AEVFPRAHHR ICLLQVMQSI CGFMVQFQEY EMNXXXXXXX 420 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXDPKTID EFERDWDALI 480 QHFGIRNHEK LQTLHEEREH WAPVYSKDTF FAGIYDYEKG ESVVPYFKGH VHQQTSLKDF 540 FEIYELVQQQ KQKTEALDDL ESQNSNPLLK TSCYYELQLS KLYTHAIFRK LQDEMVMMSS 600 CFCVSQVQTN ESIVTYMVKE DQGEEPVRDD RHFEVLYDKA VAEVRCICSC FNFKGYPCRH 660 ALYILNCNGV EEIPRQYILS RWRKDFKRLY VPHLNSDDVD ITNPVQCFDH LYKRAMQVVE 720 EGMISENHYI VSWQTFKESL NKIRRTSLNI * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA18120 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135102 | 0.0 | AC135102.16 Medicago truncatula clone mth2-8m3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027192103.1 | 0.0 | uncharacterized protein LOC101503771 | ||||
Swissprot | Q9S793 | 1e-138 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A2K3PI87 | 0.0 | A0A2K3PI87_TRIPR; Protein FAR1-related sequence 6-like | ||||
STRING | XP_004486559.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 1e-125 | FAR1-related sequence 8 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA18120 |
Publications ? help Back to Top | |||
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