PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 751aa    MW: 86876 Da    PI: 5.8688
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18120genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.91.4e-22100184190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                ++Yn+YA+e+GF +r+++s  +++++e   + ++C++eg+++ ++ +     ++r+etrtgC a++++++ +++ w+v++++le
  Tp57577_TGAC_v2_mRNA18120 100 NYYNSYAREIGFAIRVKSSWAKRNSKEKRGAVLCCNCEGFKTIKEAN-----SHRKETRTGCLAMIRLRLVESNMWRVDEVKLE 178
                                69****************************************99888.....999***************************** PP

                       FAR1  85 HnHela 90 
                                HnH++ 
  Tp57577_TGAC_v2_mRNA18120 179 HNHSFD 184
                                ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-20100184IPR004330FAR1 DNA binding domain
PfamPF105511.6E-29305398IPR018289MULE transposase domain
PROSITE profilePS509669.767633669IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-6644671IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MSSGDTVCSL NDKDLCLNPN LDITIDEGSP NTEQLLEVVD EGNELENGCS QLFGLDGSEH  60
ENGRDETTVV DSHNGESQGK KDYTQPVVGM EFETYDDAYN YYNSYAREIG FAIRVKSSWA  120
KRNSKEKRGA VLCCNCEGFK TIKEANSHRK ETRTGCLAMI RLRLVESNMW RVDEVKLEHN  180
HSFDPERAQN SKSHKRTDSG TKRKVEPTLD VEVRTIKLYR PPTVDASGYG SSNSNEGGTS  240
NNVKFSRSLK LKKGDAKLIS NYFCHCQLTS PNFFYVMDLN DDGQLRNIFW IDSRSRSAFN  300
YFGDVVAFDS TYLSNNYEIP LVAFVGVNHH GQSVLLGCGM LADETFETYI WLFRAWLTSM  360
SGRPPQTIVT NQSKTVRSAI AEVFPRAHHR ICLLQVMQSI CGFMVQFQEY EMNXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXDPKTID EFERDWDALI  480
QHFGIRNHEK LQTLHEEREH WAPVYSKDTF FAGIYDYEKG ESVVPYFKGH VHQQTSLKDF  540
FEIYELVQQQ KQKTEALDDL ESQNSNPLLK TSCYYELQLS KLYTHAIFRK LQDEMVMMSS  600
CFCVSQVQTN ESIVTYMVKE DQGEEPVRDD RHFEVLYDKA VAEVRCICSC FNFKGYPCRH  660
ALYILNCNGV EEIPRQYILS RWRKDFKRLY VPHLNSDDVD ITNPVQCFDH LYKRAMQVVE  720
EGMISENHYI VSWQTFKESL NKIRRTSLNI *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18120
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351020.0AC135102.16 Medicago truncatula clone mth2-8m3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192103.10.0uncharacterized protein LOC101503771
SwissprotQ9S7931e-138FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A2K3PI870.0A0A2K3PI87_TRIPR; Protein FAR1-related sequence 6-like
STRINGXP_004486559.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-125FAR1-related sequence 8
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]