PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA18035

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

ERF

Protein Properties

Length: 231aa MW: 24602.2 Da PI: 4.8129

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA18035	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.7e-17	45	99	1	55
AP2 1 sgykGVrwdkkrgr...WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +g+ GVr++ +r r Wv+eIr+p++ +kr++lg++ tae+Aa+a++ a+++l+g Tp57577_TGAC_v2_mRNA18035 45 TGVLGVRYRGTRCRsgkWVSEIREPRK---TKRIWLGTYPTAEMAAAAYDVAALALKG 99 57889999998888888*****843...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	20.271	46	107	IPR001471	AP2/ERF domain
Pfam	PF00847	6.2E-11	46	99	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.6E-26	51	109	IPR001471	AP2/ERF domain
SMART	SM00380	6.5E-27	51	113	IPR001471	AP2/ERF domain
CDD	cd00018	7.92E-17	51	109	No hit	No description
SuperFamily	SSF54171	1.31E-18	52	109	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MDGNNNNNNN VSAVPPAPPP IQIPNAVTSS STSAPTTPSS PATTTGVLGV RYRGTRCRSG 60 KWVSEIREPR KTKRIWLGTY PTAEMAAAAY DVAALALKGP ETTLNFPDSI PSYPIPASLS 120 STDIRAAAEA AAQTRIIKPM ISPKQEQQQQ QQQNPSSSGF EGSSSSAAAS GVPQEYIDED 180 ELLNMPNLLD EMAIGMQVSP PRMSSFSNYS SDDSPRNSDH GGDNLWSYHF *

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA18035

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC202516	1e-94	AC202516.13 Medicago truncatula clone mth2-67c18, complete sequence.
GenBank	AC212012	1e-94	AC212012.3 Medicago truncatula clone mth2-65h3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496613.1	1e-75	ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	5e-45	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A2K3NI09	1e-103	A0A2K3NI09_TRIPR; Ethylene-responsive transcription factor erf025-like protein
STRING	AES62568	4e-75	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	1e-32	ERF family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA18035

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]