PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17995
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 340aa    MW: 36080.3 Da    PI: 5.4384
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17995genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.75.8e-36641663108
                        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 
                                + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+q++pai+e+tgt++ +a ++      s +++ +
  Tp57577_TGAC_v2_mRNA17995  64 KEKRQSKDRHTKVEGRGRRIRIPAACAARIFQLTRELGHKSDGETIRWLLEQSEPAIIEATGTGTVPAIAV------SVGGTLK 141
                                679999*********************************************************99888444......1111111 PP

                        TCP  87 sg...kaaksaakskksqksaasal 108
                                ++   +a+++ + + ++++++as++
  Tp57577_TGAC_v2_mRNA17995 142 IPttsAARPDGEDTPRKRRKKASNS 166
                                2222122222223333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-2968148IPR005333Transcription factor, TCP
PROSITE profilePS5136927.41969123IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEVNPNGGAG FSEENGTQST DMSPSETTEM AVMKEELTET DNHNRQESLA VGVVPMPMTM  60
TVPKEKRQSK DRHTKVEGRG RRIRIPAACA ARIFQLTREL GHKSDGETIR WLLEQSEPAI  120
IEATGTGTVP AIAVSVGGTL KIPTTSAARP DGEDTPRKRR KKASNSEFVD VSDQVSMCSG  180
LAPIVQTPYG GAAVNGGENG GGGLVPLWPV VSNGVSNQTG PFFMFPNSTM NQPQFWAIPA  240
APFYNVQNRP ISDYVSAMQM MQQNQQPSNA SANANSSSTL VPCLNSATST TCSAASSSSA  300
GTPQMIRDFS LEIFDKKELQ FMGCSSANLG SPPTSNPSN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17995
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625426.11e-158transcription factor TCP19
RefseqXP_024625433.11e-158transcription factor TCP19
RefseqXP_024625442.11e-158transcription factor TCP19
SwissprotQ9LT891e-70TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A072VQN81e-157A0A072VQN8_MEDTR; Putative transcription factor TCP family
STRINGAES625901e-157(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.26e-54TCP family protein