PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17702
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 279aa    MW: 31755.5 Da    PI: 6.5806
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17702genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.48.3e-12651501091
                       FAR1  10 vGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                                 GF vrk++s+ ++ ng   + +++fvC+ +g re+++ +  +++ ++r  +rt+ +  l v+ ek +++++vt +e+ HnHel
  Tp57577_TGAC_v2_mRNA17702  65 EGFAVRKASSRIREINGikITQMKQFVCNIHGLREKKHLTrLDRKLEHRRLSRTNSEDGLCVQYEKqKDRYVVTAFEECHNHEL 148
                                59********999776611456799**********9998856778889***************9999****************9 PP

                       FAR1  90 ap 91 
                                +p
  Tp57577_TGAC_v2_mRNA17702 149 TP 150
                                86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-1065150IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MENSDESVDV ESRDLHSTNG GDTYDSELNA DENESYSASS GDKSSEIGDD ASDNGNNDGD  60
AIDSEGFAVR KASSRIREIN GIKITQMKQF VCNIHGLREK KHLTRLDRKL EHRRLSRTNS  120
EDGLCVQYEK QKDRYVVTAF EECHNHELTP VRFVHLHSVY RKISEADKAR IDGLQTRGIR  180
TCHIMGIIKE TELEEHSWVV KTYENRSLWA TAYLRGQFFG RIRTTSQCEA VNAIIKSYVG  240
TKGCIFEFMH NSCTNFLTPT YKLLQATCFV FVVKMIYV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17702
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631935.11e-39protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_024631936.19e-40protein FAR1-RELATED SEQUENCE 5-like isoform X2
RefseqXP_024631937.19e-40protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A2K3L3Z61e-83A0A2K3L3Z6_TRIPR; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-09FAR1-related sequence 5