PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA17702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 279aa MW: 31755.5 Da PI: 6.5806 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.4 | 8.3e-12 | 65 | 150 | 10 | 91 |
FAR1 10 vGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 GF vrk++s+ ++ ng + +++fvC+ +g re+++ + +++ ++r +rt+ + l v+ ek +++++vt +e+ HnHel Tp57577_TGAC_v2_mRNA17702 65 EGFAVRKASSRIREINGikITQMKQFVCNIHGLREKKHLTrLDRKLEHRRLSRTNSEDGLCVQYEKqKDRYVVTAFEECHNHEL 148 59********999776611456799**********9998856778889***************9999****************9 PP FAR1 90 ap 91 +p Tp57577_TGAC_v2_mRNA17702 149 TP 150 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.6E-10 | 65 | 150 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MENSDESVDV ESRDLHSTNG GDTYDSELNA DENESYSASS GDKSSEIGDD ASDNGNNDGD 60 AIDSEGFAVR KASSRIREIN GIKITQMKQF VCNIHGLREK KHLTRLDRKL EHRRLSRTNS 120 EDGLCVQYEK QKDRYVVTAF EECHNHELTP VRFVHLHSVY RKISEADKAR IDGLQTRGIR 180 TCHIMGIIKE TELEEHSWVV KTYENRSLWA TAYLRGQFFG RIRTTSQCEA VNAIIKSYVG 240 TKGCIFEFMH NSCTNFLTPT YKLLQATCFV FVVKMIYV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA17702 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024631935.1 | 1e-39 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_024631936.1 | 9e-40 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
Refseq | XP_024631937.1 | 9e-40 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A2K3L3Z6 | 1e-83 | A0A2K3L3Z6_TRIPR; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-09 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA17702 |