PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA17572 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 229aa MW: 27252 Da PI: 10.0388 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 36.6 | 1.5e-11 | 71 | 129 | 37 | 90 |
FAR1 37 kegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnHela 90 +eg+ + + + +ke+r+r+++r++Cka+l+++++k ++w+vtk++ eHnH+l Tp57577_TGAC_v2_mRNA17572 71 REGSVSLKIIDPSKEQRKRESSRCECKAHLRISLQKsldifPSEWRVTKFVAEHNHDLL 129 5666666666678999******************9977666689*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-9 | 71 | 129 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MRMVTRKQLL SNLIMLLWQI LFLLLVKFFL VKKKHLPFIR DMHINMGSQF EKVDSSIKME 60 LLADVIFFFH REGSVSLKII DPSKEQRKRE SSRCECKAHL RISLQKSLDI FPSEWRVTKF 120 VAEHNHDLLT QPEVRFLPAY RTILEEDHGR IFLLKEGGLS VRQIMRVIEL EKNVKHGYLP 180 FIEKDIRNLF LKANKQIERS DVMNLLKYFE YAKESSSNFQ YAYTIDKEG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA17572 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630878.1 | 2e-81 | protein FAR1-RELATED SEQUENCE 11-like | ||||
TrEMBL | A0A072UI16 | 1e-80 | A0A072UI16_MEDTR; FAR1 DNA-binding domain protein | ||||
TrEMBL | A0A2K3N750 | 1e-81 | A0A2K3N750_TRIPR; Protein FAR1-related sequence 11-like | ||||
STRING | AES62383 | 1e-78 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15165 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 3e-42 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA17572 |