PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA17538 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 404aa MW: 45908.7 Da PI: 7.7029 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.7 | 5.5e-25 | 132 | 222 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYneY+k++GF +r+++ +ksk +g t+r+f+C keg+r +k++ ++ +raetr+gC+a++++++++ gk++v +++ Tp57577_TGAC_v2_mRNA17538 132 DFYNEYSKKMGFGIRREYGNKSKIDGVLTSRRFTCFKEGNRGVDKRD-YLTKDRRAETRIGCQARMVISLDRkIGKYKVVDFVA 214 6******************************************9999.99999*****************9989********** PP FAR1 84 eHnHelap 91 +HnH l+p Tp57577_TGAC_v2_mRNA17538 215 QHNHMLQP 222 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-20 | 132 | 222 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
LTEFRLFAVL KFHTAVVIAA CCSFQVSLLS RHHSAGCCXX SSSPLVAPSS SPLIRSVSST 60 VFCSATLPHI VYEVIGSYLS ENMNGSSTPI AEGVQQLVNN IQANIVDHGR ESDVNYIPHL 120 EMEFESEVAA YDFYNEYSKK MGFGIRREYG NKSKIDGVLT SRRFTCFKEG NRGVDKRDYL 180 TKDRRAETRI GCQARMVISL DRKIGKYKVV DFVAQHNHML QPNEYVHMIR SHRXXXXXXL 240 ADESGLKPKD FHNYVSKQAG GKEIIGYTRQ DLKNYLRTKR MHTLRFGEVG ALLMHFKQQS 300 ENPSFFYEFQ MDVEEQITNI FWADAQMIND YGYFGDVITF DTTYKTNKDY QHVTAYQHEA 360 ASQHGTAYQH GTVYQLGAAS QHGTAYQHEA ASQHGTAYQL FYI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA17538 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027191736.1 | 1e-141 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2Z6N2Q3 | 1e-157 | A0A2Z6N2Q3_TRISU; Uncharacterized protein | ||||
STRING | XP_004503202.1 | 1e-139 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-47 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA17538 |