PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1747
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 680aa    MW: 76026.4 Da    PI: 6.1082
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1747genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.3e-22116215197
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f kvlt+sd++++g +++ +k+a+e+       ++ +  +++l+ +d+++ +W +k+i+r++++r++lt+GW+ Fv +++L +gD
  Tp57577_TGAC_v2_mRNA1747 116 FSKVLTNSDTSTHGGFSVLRKHATEClppldlsQSTP--TQELVARDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGD 198
                               88****************************9754444..458******************************************* PP

                               EEEEEE-SSSEE..EEEEE CS
                        B3  79 fvvFkldgrsefelvvkvf 97 
                               ++vF   + +++el+v+v+
  Tp57577_TGAC_v2_mRNA1747 199 TFVFL--RGENGELRVGVR 215
                               *****..4499999**997 PP
2Auxin_resp92.85.8e-31242323183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               a+ha++t++ F v+Y+Pr+  s+F+++v+k+++a+++k+svGmRfkm+f+++dsse  +r+sGt+vg +d+++ +W nSkWrsLk
  Tp57577_TGAC_v2_mRNA1747 242 ASHAVATQTLFVVYYKPRM--SQFIISVNKYMEAINQKYSVGMRFKMSFDGDDSSEtdKRFSGTIVGQEDISS-HWLNSKWRSLK 323
                               789***************7..9********************************9833567*********777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-38104245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-37108229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-19114215No hitNo description
SMARTSM010192.1E-19116218IPR003340B3 DNA binding domain
PfamPF023622.6E-20116215IPR003340B3 DNA binding domain
PROSITE profilePS5086311.519116218IPR003340B3 DNA binding domain
PfamPF065072.6E-29242323IPR010525Auxin response factor
PfamPF023094.6E-7546605IPR033389AUX/IAA domain
SuperFamilySSF542772.94E-12566645No hitNo description
PROSITE profilePS5174524.683569650IPR000270PB1 domain
PfamPF023093.5E-6616654IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MMLNSSGEDE LYEQLWKACA GPHVEVPRTG QMVYYFPQGH MEQLEVSTNQ ELNQRIPLFK  60
LPNKILCRVV NVHLLAEQET DEVYAQITLV PESNQTEPTS LDPCPAEPPR PKIHSFSKVL  120
TNSDTSTHGG FSVLRKHATE CLPPLDLSQS TPTQELVARD LHNYEWHFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLVAGDTF VFLRGENGEL RVGVRHLASP QSCMPSSVIS GQSMHLGVLA  240
TASHAVATQT LFVVYYKPRM SQFIISVNKY MEAINQKYSV GMRFKMSFDG DDSSETDKRF  300
SGTIVGQEDI SSHWLNSKWR SLKVQWDDAA SIPRPDRISP WEIEPLLASV PISPQPAAVK  360
YKKPRLPSEV PDLGDTAPGD STYWEAGLTQ SDVTQVNIMS ENQRSESMHM WHHKLTDNSS  420
CNGKSRNPTD GSWLSSPHSS GPSHLCQDTT DDSKSVNVSA WPISKTHSEI LNNNDHLIDK  480
VDKENKVEPA TSCRLFGVYL NDSSRNSQKA SEYAENVFGV PSEGCVAAPL SRTDTDQNKF  540
DISKSSKERK QEPLQISPNE TQSKQINSRS CTKVQMQGVA VGRAVDLTAL HGYGELIDEL  600
EKLFDIKGQI KPRNKWEIVF TDDEGDMMLV GDDPWPEFCN MVKRIFICSS QDVHKMSTGT  660
KLPISSIEET VISSDTAET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-163934617355Auxin response factor 1
4ldw_A1e-163934617355Auxin response factor 1
4ldw_B1e-163934617355Auxin response factor 1
4ldx_A1e-163934617355Auxin response factor 1
4ldx_B1e-163934617355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1747
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-56AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448901.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2K3P6A20.0A0A2K3P6A2_TRIPR; Auxin response factor
STRINGXP_007140507.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9