PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17469
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 311aa    MW: 35332.4 Da    PI: 6.8537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17469genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.2e-12135181455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h ++Er+RR+++ ++f  L  l+P +     +K++Ka++L  A++Y+k+Lq
  Tp57577_TGAC_v2_mRNA17469 135 DHIIAERKRREKLSQRFIALSALVPGL-----QKMDKATVLGDAIKYLKKLQ 181
                                6999**********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.586131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-17135195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-18135198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9136181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-12136185No hitNo description
SMARTSM003534.9E-15137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MENISFIRGF PDQEIVEDPS LCLHQWHLNS IDESNSLPIA SAFGDTLHHH SYIYPNFNRR  60
TSVETAPKLD TQFVSYPNLV SFVDLNHVNQ FGLTKPKDEM VCPQNSKTAP SDMIPQGTFE  120
AKKLATRPKL SLPQDHIIAE RKRREKLSQR FIALSALVPG LQKMDKATVL GDAIKYLKKL  180
QEKVRDLEEE QNMKKNVETV VVVKKSQLRN DVENSSAESG GPFDEELPEI EARFCDRNVL  240
IRIHCEKSNG VVEKTIHEIE KLHLKVTNSS VMTFGNCALD ITIMAQMDKE FYMTVKDLVR  300
NLRSTFASFI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-15133224683Transcription factor MYC2
5gnj_B5e-15133224683Transcription factor MYC2
5gnj_E5e-15133224683Transcription factor MYC2
5gnj_F5e-15133224683Transcription factor MYC2
5gnj_G5e-15133224683Transcription factor MYC2
5gnj_I5e-15133224683Transcription factor MYC2
5gnj_M5e-15133224683Transcription factor MYC2
5gnj_N5e-15133224683Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144ERKRRE
2140145RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17469
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1242141e-131AC124214.8 Medicago truncatula clone mth2-36a23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504883.20.0transcription factor bHLH25-like
SwissprotQ9T0724e-59BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2K3PET60.0A0A2K3PET6_TRIPR; Transcription factor bHLH25-like protein
STRINGAES905250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-55bHLH family protein