PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17388
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 630aa    MW: 70084.9 Da    PI: 7.3082
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17388genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.32.9e-11201257155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Tp57577_TGAC_v2_mRNA17388 201 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 257
                                57*******************4444.2455535555.779999**************98 PP
2AP246.59.4e-15300351155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Tp57577_TGAC_v2_mRNA17388 300 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 351
                                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-8201257IPR001471AP2/ERF domain
CDDcd000181.03E-19201267No hitNo description
SuperFamilySSF541719.15E-15201267IPR016177DNA-binding domain
PROSITE profilePS5103217.319202265IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-12202266IPR001471AP2/ERF domain
SMARTSM003802.6E-22202271IPR001471AP2/ERF domain
PRINTSPR003672.4E-6203214IPR001471AP2/ERF domain
PfamPF008473.2E-10300351IPR001471AP2/ERF domain
CDDcd000182.28E-25300361No hitNo description
SuperFamilySSF541717.85E-18300361IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-18301360IPR001471AP2/ERF domain
SMARTSM003807.0E-34301365IPR001471AP2/ERF domain
PROSITE profilePS5103219.058301359IPR001471AP2/ERF domain
PRINTSPR003672.4E-6341361IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MASMNLLGFS LSPQEQHPST HQDQTVASRF GFNPHDGSDV QQGFDLSSHS TSHHHSLNNL  60
SHPFTIYEAF HTNNNIQTTQ ARRFINDKNM AQKPTTTRKX XXXXXXXXXX XXXXXXXXXX  120
XXXSGAARVQ TLSLSMSTGS QSSSSVPLLT SNVISGEISS SENKQLLPTT AVVLDNNQSS  180
GAVVESTVPR KSIDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQGGYDK  240
EEKAARAYDL AALKYWGTTT TTNFPISHYE KELEEMKNMT RQEYVASLRR KSSGFSRGAS  300
IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDVAAIKFR GLSAVTNFDM  360
SRYDVKTILD SSTLPIGGAA KRLKDMEQVE SLNNVNHVNV DQDHHHHSLI INNNTSHNLT  420
DHQTINNYAA TNAAAAAAAN WHGLSFQQHP YNTNMQLQNY PFGGAQTQKL WCKQEQDSDD  480
HNAYTTSDIH HQQLQLGNNA IANNTHNFFG LQNIMSMDSA SMDNNSSGSN SVVYGGGDHG  540
GYGGYMIPMA IGNDANESET KGFGYENVFG NTDPYAARNL YYHHQQQQLS FDEGSNCNNN  600
NNWVPTAIPT LAPRTSNVSL CPPFTLLHE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17388
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8999090.0AY899909.1 Medicago truncatula AP2/EREBP transcription factor BABY BOOM (BBM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624212.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A2Z6N8900.0A0A2Z6N890_TRISU; Uncharacterized protein
STRINGAES804300.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-129AP2 family protein