PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA17387 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 140aa MW: 16333.1 Da PI: 4.4783 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.8e-08 | 19 | 65 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W+ e+ +++ +a + + + +W++Ia++++ +++ ++k+++q++ Tp57577_TGAC_v2_mRNA17387 19 QWSREDGKIFERALLMVPENspnRWEKIAEKVP-DKSAAEVKDYYQDL 65 6*****************99*************.************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.82E-10 | 15 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-7 | 16 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-7 | 19 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-5 | 19 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.82E-5 | 20 | 65 | No hit | No description |
PROSITE profile | PS50090 | 6.33 | 20 | 66 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 4.879 | 95 | 123 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MYQNTIDMAT TVTTRSPTQW SREDGKIFER ALLMVPENSP NRWEKIAEKV PDKSAAEVKD 60 YYQDLDHEIS EIEAGRVEIP IYPDDLAESG GSGSSDSEKE TPWTKEEQRL FLAELEKYEK 120 EDWFQKRFKI LSWDKNTHR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA17387 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013470249.1 | 1e-36 | transcription factor DIVARICATA | ||||
TrEMBL | A0A2K3KNZ3 | 9e-50 | A0A2K3KNZ3_TRIPR; Transcription factor DIVARICATA-like protein (Fragment) | ||||
STRING | AES84368 | 4e-36 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-26 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA17387 |