PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA17378 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 19616.2 Da PI: 6.4955 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.8 | 8.9e-39 | 18 | 118 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk +rr+C++dC+++pyfp ++p++fa+vhk++G snv k+l++lpe re+a+++l+ eA+ r++dPvyG+vg+++kl Tp57577_TGAC_v2_mRNA17378 18 RCAACKSQRRRCPSDCIFSPYFPPNDPQRFAYVHKIYGGSNVGKMLQQLPEYLREQAVNTLYLEAQSRIQDPVYGCVGIVSKLY 101 6*********************************************************************************** PP DUF260 85 qqleqlkaelallkeel 101 qq++ ++aela++++++ Tp57577_TGAC_v2_mRNA17378 102 QQIHDTEAELAKIQTQI 118 ************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.273 | 17 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-38 | 18 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
LDFFPLYTKD SEIMIYGRCA ACKSQRRRCP SDCIFSPYFP PNDPQRFAYV HKIYGGSNVG 60 KMLQQLPEYL REQAVNTLYL EAQSRIQDPV YGCVGIVSKL YQQIHDTEAE LAKIQTQIAC 120 HKLQNQQFEV ESNFNVLSTV DAESKLNFLP TQSNSMEQIQ WPNHVPNLFN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 19 | 125 | 12 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 19 | 125 | 12 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA17378 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU179894 | 2e-73 | CU179894.1 Medicago truncatula chromosome 5 clone mth4-21m22, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491406.1 | 5e-94 | LOB domain-containing protein 23-like | ||||
Swissprot | P59467 | 1e-45 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 1e-45 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2K3LTZ7 | 1e-105 | A0A2K3LTZ7_TRIPR; LOB domain-containing protein 24-like | ||||
STRING | XP_004491406.1 | 2e-93 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 4e-48 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA17378 |