PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17267
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 723aa    MW: 78732.8 Da    PI: 6.5127
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17267genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32276333260
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  Tp57577_TGAC_v2_mRNA17267 276 EDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCPVKKKVERSH-EGHITEIIYKGAHNHPK 333
                                7****************************************.***************85 PP
2WRKY102.81.9e-32514572159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA17267 514 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 572
                                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-30261334IPR003657WRKY domain
SuperFamilySSF1182904.45E-26272334IPR003657WRKY domain
SMARTSM007746.2E-36275333IPR003657WRKY domain
PROSITE profilePS5081123.502276334IPR003657WRKY domain
PfamPF031062.6E-25276332IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-37499574IPR003657WRKY domain
SuperFamilySSF1182901.96E-28506574IPR003657WRKY domain
PROSITE profilePS5081138.32509574IPR003657WRKY domain
SMARTSM007741.9E-37514573IPR003657WRKY domain
PfamPF031067.4E-25515572IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MAGIDENLAL NGDWGLPSPS PRTLFSRMLE EENNVIRPNS EHSGNGRTEA QDGDSGTQLS  60
DMSYPTEQKS SSRGGLVERI AARTGFNAPR LNTESIRSTE LSLNSEIQSP YLTIPPGLSP  120
TTLLDSPVFL VNSLAQPSPT TGKFPFVSNG NIRCTELSSD VQEKSKQNGF NDIYASSFAF  180
KPTTDSGPSF YHGAGRNINP TTFSQQSLHG IEASVQSQRV DPVKVQTENK SSLHLKAEFS  240
NSPPQKDNSP PMEEQADEEG EQRVNVDSLV AGTPSEDGYN WRKYGQKQVK GSEYPRSYYK  300
CTHSNCPVKK KVERSHEGHI TEIIYKGAHN HPKPPPSRRA GIGSTNSHAD MQGDNPEHGE  360
PQGGGDGXXX XXXXXXXXXX XXXXXXXXXG DADRGWANLQ KGNIAGAGNW KPDNLEATSS  420
LNPEYGNQST NLQTQNGTAH FDSGDAVDGS STFSNEGEDD QATNGSVSLA YDVEGDESES  480
KRRKLESYAE MSGATRAIRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC  540
TNAGCTVRKH VERASHDLKS VITTYEGKHN HDVPAARSSS HVNANASNAG QGQASGLLQN  600
HVHRNEPSQI HNGIGRPSFG SFNLPGRQQL GHPHGFSFGM NQHLSNLAMS GLGSSSQAKF  660
PVMPMNPFMA QQQRPANEMG FMLPKGEPNV DANPERSGLN MHNGSSSMYQ DIMNHMPLGP  720
HM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36276575878Probable WRKY transcription factor 4
2lex_A2e-36276575878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17267
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1422270.0BT142227.1 Medicago truncatula clone JCVI-FLMt-22I14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458833.10.0probable WRKY transcription factor 2
RefseqXP_024633691.10.0probable WRKY transcription factor 2
SwissprotQ9FG771e-173WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2U8UG520.0A0A2U8UG52_TRIRP; Putative WRKY transcription factor 2 (Fragment)
STRINGXP_004499679.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-172WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]