PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1720
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 179aa    MW: 20070.6 Da    PI: 8.4511
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1720genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.7e-322581258
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                      WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                              dDgy+WrKYGqK++k+s++prsYYrCt ++C +kk+vers ed ++++itYeg H h
  Tp57577_TGAC_v2_mRNA1720 25 DDGYRWRKYGQKSIKNSPNPRSYYRCTNPKCGAKKQVERSIEDLDTLIITYEGLHLH 81
                              8******************************************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.5091981IPR003657WRKY domain
SuperFamilySSF1182901.03E-262181IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-292181IPR003657WRKY domain
SMARTSM007742.0E-352483IPR003657WRKY domain
PfamPF031062.1E-252581IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
LEKSLSKIEN KYTLKIKCFG NGMSDDGYRW RKYGQKSIKN SPNPRSYYRC TNPKCGAKKQ  60
VERSIEDLDT LIITYEGLHL HFTYPYFLVG QSNSHPPIKK SKPTSSEGPT QVHKANDVHE  120
GQIIQEAHEA QTSASLGLIP PNLLDSTHDK VQENLTSQGL LEDMVPLMVR NPTNNVDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-2223811371WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1720
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448880.11e-104probable WRKY transcription factor 49
SwissprotQ9FHR72e-45WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A072TZR71e-103A0A072TZR7_MEDTR; Putative transcription factor WRKY family
STRINGXP_004514387.12e-93(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-47WRKY DNA-binding protein 49