PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA1720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 179aa MW: 20070.6 Da PI: 8.4511 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.9 | 7.7e-32 | 25 | 81 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C +kk+vers ed ++++itYeg H h Tp57577_TGAC_v2_mRNA1720 25 DDGYRWRKYGQKSIKNSPNPRSYYRCTNPKCGAKKQVERSIEDLDTLIITYEGLHLH 81 8******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.509 | 19 | 81 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-26 | 21 | 81 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-29 | 21 | 81 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-35 | 24 | 83 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-25 | 25 | 81 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
LEKSLSKIEN KYTLKIKCFG NGMSDDGYRW RKYGQKSIKN SPNPRSYYRC TNPKCGAKKQ 60 VERSIEDLDT LIITYEGLHL HFTYPYFLVG QSNSHPPIKK SKPTSSEGPT QVHKANDVHE 120 GQIIQEAHEA QTSASLGLIP PNLLDSTHDK VQENLTSQGL LEDMVPLMVR NPTNNVDT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-22 | 23 | 81 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA1720 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013448880.1 | 1e-104 | probable WRKY transcription factor 49 | ||||
Swissprot | Q9FHR7 | 2e-45 | WRK49_ARATH; Probable WRKY transcription factor 49 | ||||
TrEMBL | A0A072TZR7 | 1e-103 | A0A072TZR7_MEDTR; Putative transcription factor WRKY family | ||||
STRING | XP_004514387.1 | 2e-93 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7118 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 1e-47 | WRKY DNA-binding protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA1720 |