PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA17135 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 138aa MW: 16232.4 Da PI: 7.794 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 64.6 | 2.4e-20 | 11 | 110 | 2 | 99 |
DUF260 2 CaaCkvlrrkCakd..CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 C Ck lr +C+++ C + yfp +++ +f+++ +++G +n+++++++++e++r+++++sl++e+ + P +G +g + + Tp57577_TGAC_v2_mRNA17135 11 CLLCKRLRTTCNNNnnCEFGMYFPPHRNDDFKCALEVYGLTNIIRIMQSVEEDQRQATANSLLFEGFSWRFHPTNGLFGYKSFM 94 999********87666******************************************************************** PP DUF260 84 qqqleqlkaelallke 99 +q++++ el+ l++ Tp57577_TGAC_v2_mRNA17135 95 DEQINSSLRELQILNN 110 ******9999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.038 | 9 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-18 | 10 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MNQQNIDANK CLLCKRLRTT CNNNNNCEFG MYFPPHRNDD FKCALEVYGL TNIIRIMQSV 60 EEDQRQATAN SLLFEGFSWR FHPTNGLFGY KSFMDEQINS SLRELQILNN LLKFCKDHEN 120 SNSQRVRYLV IFNQFFL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA17135 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16300 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19820.1 | 8e-12 | LOB domain-containing protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA17135 |