PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1700
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 144aa    MW: 15840.2 Da    PI: 8.5666
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1700genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.69.7e-202457134
                      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                              C+ C++tkTplWR gp+g+ktLCnaCG++yrk++
  Tp57577_TGAC_v2_mRNA1700 24 CADCKATKTPLWRGGPNGPKTLCNACGIRYRKRR 57
                              ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-151870IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-132161No hitNo description
Gene3DG3DSA:3.30.50.108.2E-152256IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.08E-122373No hitNo description
PROSITE profilePS5011412.4792454IPR000679Zinc finger, GATA-type
PfamPF003202.0E-172457IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MGIMDQMEKE CCSYDEMGMI KKACADCKAT KTPLWRGGPN GPKTLCNACG IRYRKRRGSC  60
NSKGQERERK REKAQNGRNR SSDDDGGGGS DDDLNECLKM KLVALGEEVL LHSVLKKQRR  120
IKLGEEEQAA VCLMALSCGF VFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122KQRRIKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494549.11e-74GATA transcription factor 16-like isoform X1
TrEMBLA0A2K3M7P22e-99A0A2K3M7P2_TRIPR; GATA transcription factor 16-like protein
STRINGXP_004494549.14e-74(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.15e-25GATA transcription factor 15