PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16971
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 544aa    MW: 61685.2 Da    PI: 9.0366
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16971genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-132471148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g W+++Ed++lvd+v+++G + W+ + ++  + R+++ c+ rw ++l
  Tp57577_TGAC_v2_mRNA16971 24 KGTWSKDEDKILVDYVTKYGARKWNEVQKRTELARSGNCCRFRWINHL 71
                               799******************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-171874IPR009057Homeodomain-like
PROSITE profilePS5129421.8091975IPR017930Myb domain
SMARTSM007173.4E-92373IPR001005SANT/Myb domain
SuperFamilySSF466891.68E-1924120IPR009057Homeodomain-like
CDDcd001671.88E-82671No hitNo description
PfamPF139217.9E-122786No hitNo description
PROSITE profilePS500906.70272121IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.0E-1375122IPR009057Homeodomain-like
SMARTSM007170.001776123IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MSSSSKQEKN NDGDNNNTNR SLKKGTWSKD EDKILVDYVT KYGARKWNEV QKRTELARSG  60
NCCRFRWINH LQPGVVKGKF SEHEAKEVIR MKKLNLKWCD MAKQLPGRSD NDIKNFWNAR  120
ERKLNRENSL NGSSSLSHDH ELNDNREKSL SGSTSTSQQV DSQDDKYSKQ FPKLIDDSNK  180
QLPKFPKLVN DSNMFYTNVG STSISNHTTP SGINRAGIGT SFMHEARVPN PSSFSPYLNL  240
QNMYNPLPSI EHNLHGKYPS RYDEINAKLF EVSNKELPKW VDDSKMPYYC VGSTSTSKHT  300
TPTWTNRVGN GTSSNQFTMV PNPLPPCSYV QNMDYQLPSY KKLGEYPQNP LPPPKEAQYQ  360
RTGSVSPYRT KKIMEDYNAS RVHSSKVNLA DGNGKKPISF ENDFGANSLR NFTDSYLRRA  420
SSLLDNGNNN NLNDKLPHDV KDTLNTAINE KGIDWDRFSY FGSFDNNVNN NLHDKIPHNN  480
DKILDDIKDT LGAALHGKGI DSDHFPDLSS SDNDDNNNLH DKIPHNMKDT LDAVIYGKSF  540
HPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-201912322126MYB TRANSFORMING PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16971
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.11e-32myb domain protein 65