PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16889
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 145aa    MW: 16939.5 Da    PI: 6.5075
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16889genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.48.7e-4362139178
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                +Cqve+C+adlseak+yhrrhkvCe h+kap+v + g++qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk+++
  Tp57577_TGAC_v2_mRNA16889  62 CCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHIVGMQQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKNAS 139
                                6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375751.4E-581144IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.8E-3556124IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.79560137IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-3961140IPR004333Transcription factor, SBP-box
PfamPF031107.9E-3463136IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
METRSSEGKR SLRYKEEDEE EDEEDMDFEE EEDGRRKRVV TDLYSNKRGS NKAGGSSNIT  60
PCCQVENCDA DLSEAKQYHR RHKVCEYHAK APAVHIVGMQ QRFCQQCSRF HELSEFDDTK  120
RSCRRRLAGH NERRRKNASD YQGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3653136284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16889
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1424421e-132BT142442.1 Medicago truncatula clone JCVI-FLMt-8F22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637451.12e-71squamosa promoter-binding-like protein 3 isoform X1
RefseqXP_024637452.12e-71squamosa promoter-binding-like protein 3 isoform X1
SwissprotQ387419e-46SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A396IC844e-70A0A396IC84_MEDTR; Squamosa promoter-binding-like protein
STRINGXP_004505078.14e-55(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.15e-44squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]