PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA16867 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 123aa MW: 13533.8 Da PI: 8.6675 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.1 | 1.2e-37 | 8 | 98 | 1 | 90 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqq Tp57577_TGAC_v2_mRNA16867 8 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQ 93 7*************************89********************************************************** PP DUF260 86 qleql 90 q++++ Tp57577_TGAC_v2_mRNA16867 94 QVCSS 98 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.317 | 7 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-35 | 8 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MMTGSGSPCG ACKFLRRKCV RGCVFAPYFC HEQGATHFAA IHKVFGASNV SKLLAHLPVT 60 DRCEAAVTIS YEAQARLQDP IYGCVAHIFA LQQQVCSSLM MRITSNINKH ICIAENPRFF 120 FF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-35 | 4 | 95 | 7 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-35 | 4 | 95 | 7 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA16867 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092157 | 5e-92 | BT092157.1 Soybean clone JCVI-FLGm-10A4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013449868.1 | 2e-65 | LOB domain-containing protein 29 | ||||
Refseq | XP_014513182.2 | 5e-65 | LOB domain-containing protein 29 | ||||
Swissprot | Q5UG13 | 9e-60 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | A0A2K3PMT9 | 3e-64 | A0A2K3PMT9_TRIPR; LOB domain-containing protein 29-like | ||||
TrEMBL | A0A2Z6M4U2 | 3e-64 | A0A2Z6M4U2_TRISU; Uncharacterized protein | ||||
STRING | Migut.D00408.1.p | 3e-64 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-59 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA16867 |
Publications ? help Back to Top | |||
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