PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1686
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 686aa    MW: 75205 Da    PI: 6.5358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1686genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.51.5e-15438484455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Tp57577_TGAC_v2_mRNA1686 438 VHNLSERRRRDRINERMRALQELIPNC-----NKSDKASMLDEAIEYLKTLQ 484
                               5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.49E-9430488No hitNo description
SuperFamilySSF474591.31E-20431502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-20431492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.254434483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-13438484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-17440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MMPLHELYNM SKEKVDHKEM NNSCAHDQSS VPKNDLFELV LENGQISVQG QSSSISNRGK  60
KSSACKSLPS HTLRGHGKDI GQHGNETNTR MKKFEDLDNG NLNEILTRNV SSNHDDDLMM  120
PWLNYAMDEN SLQHDYNYSF LHELSGVNTN DFPASNKFSL LDRGSNCIQV FSDSHKQGIL  180
CKGSSVAAAT EEFETFGLKN SNTQLYTGSR LHQCQPSLEN DSKRNANQHA PCEEISRIPS  240
SSTIMNFTHF AKPVATVKAN LHNIGLSSSR SENLGIKNKD EAAIDISPFE STKVHLSGDC  300
PRNSAIHYQH SVEPSRVDLK SLEPRSLEQN AGVSTPACKE DVFKVEQTSN QVLGESGRKG  360
QEAVEKCMEQ TVVTSSVCSD NGAYRGSDDT NKNLKRKNLD SEDSEWNSED VEDESIGVKR  420
TAHGRGGIGS KRNRSAEVHN LSERRRRDRI NERMRALQEL IPNCNKSDKA SMLDEAIEYL  480
KTLQLQLQIM SMGGGGLYMP MMLPAGMQHM HAAHMSPFSP MNIGMQMGLG VPQFQGTHLP  540
VAHTSGLAAL HGMSRPNHQM FGNNLGTHLP MPCAPMFSYP GESVMNSSAV GLNPSGTAGL  600
METVELVSTP KLMDPMPNVS SQVMQNNNGC NSTNQVSIQG KGETRTGGLE QSNLIIDSGH  660
ALSINDKGAV NPRKEDNLVI DKSHE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1442447ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1686
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626129.20.0transcription factor PIF3
TrEMBLA0A2K3P4T10.0A0A2K3P4T1_TRIPR; Transcription factor PIF3-like protein
STRINGAES823470.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-34phytochrome interacting factor 3