PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA16832

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 370aa MW: 41899.5 Da PI: 8.2884

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA16832	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	53.2	6.5e-17	319	350	25	56
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRla 56 + AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Tp57577_TGAC_v2_mRNA16832 319 KTATPKQIRELMQVDGLTNDEVKSHLQKYRLH 350 78****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.55E-7	317	353	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-15	319	354	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-13	319	350	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MGCVVPSELS LELRPTFVPK TIANFLYHLS TLQNTSDKLS KLHDFVSRFE EELNKIQAFK 60 RELPLCMLLL IDAISVLKEE LEKCRTQNSV PVLEEFIPLK KEIDQSQENN NNDDRENNNN 120 NECRDKKNWM SSVQLWNNNT TTNNNVVDHD KHNNNHNKLE TKKRDEEGQS MTIAEETFQS 180 CSSNRNGGSA FMPFSTYSSV PVTTVKLSAP KEEKEETVMN GFSLLSSGVK SLREGFGSKG 240 SKSSSNRAVS SSPPTVQPSL RTPPLQPQQT SRKXXXXXXX XXXXXRLNCT GDLSMHCRSL 300 EVLKISKWMD VLEVNANLKT ATPKQIRELM QVDGLTNDEV KSHLQKYRLH TRRIGVEEMG 360 MKIILSVTK*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MGCVVPSELS LELRPTFVPK TIANFLYHLS TLQNTSDKLS KLHDFVSRFE EELNKIQAFK  60
RELPLCMLLL IDAISVLKEE LEKCRTQNSV PVLEEFIPLK KEIDQSQENN NNDDRENNNN  120
NECRDKKNWM SSVQLWNNNT TTNNNVVDHD KHNNNHNKLE TKKRDEEGQS MTIAEETFQS  180
CSSNRNGGSA FMPFSTYSSV PVTTVKLSAP KEEKEETVMN GFSLLSSGVK SLREGFGSKG  240
SKSSSNRAVS SSPPTVQPSL RTPPLQPQQT SRKXXXXXXX XXXXXRLNCT GDLSMHCRSL  300
EVLKISKWMD VLEVNANLKT ATPKQIRELM QVDGLTNDEV KSHLQKYRLH TRRIGVEEMG  360
MKIILSVTK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA16832

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456887.1	1e-144	myb family transcription factor EFM isoform X1
TrEMBL	A0A2K3NC56	1e-179	A0A2K3NC56_TRIPR; Putative transcription factor RL9-like protein
STRING	XP_004505182.1	1e-100	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1208	34	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	2e-18	G2-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA16832