PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16639
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 306aa    MW: 34654.8 Da    PI: 7.0801
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16639genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.3e-221664149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               k+i n+s   vtfskRr+g++KKA+ELS+LC+a+va+iifs++gk + +
  Tp57577_TGAC_v2_mRNA16639 16 KKITNESSMLVTFSKRRTGLFKKASELSTLCGANVALIIFSPSGKAFSF 64
                               6899****************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-32867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.371868IPR002100Transcription factor, MADS-box
CDDcd002652.45E-36977No hitNo description
SuperFamilySSF554553.92E-28983IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-201030IPR002100Transcription factor, MADS-box
PfamPF003193.5E-241764IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-203045IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-204566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSSGRKSRGR QKIEMKKITN ESSMLVTFSK RRTGLFKKAS ELSTLCGANV ALIIFSPSGK  60
AFSFGHPNVD TVIDRYLSLV PSQNNGDMQF IEADVRELNS QLTRFNNALD IERRRSVELS  120
HMHNMNETQC WLNRPVDEMN FDQLESLKNA LENLKKHIAE HPARLVIQGA FTQTMPFFVG  180
DGLSSNMDVH HQPNYQKGQR FPTQPFQDHM LQPYLFDYNN MGGGGYGPFE TDSSSNMHVN  240
HQSNHQQDQI FQAQPFQDPI LQPYLFDCNN MGGGGYPPFE NGSSSNMHVH HQPNHQGQMF  300
AAQPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-14976168Myocyte-specific enhancer factor 2A
3mu6_B2e-14976168Myocyte-specific enhancer factor 2A
3mu6_C2e-14976168Myocyte-specific enhancer factor 2A
3mu6_D2e-14976168Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16639
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628107.11e-101agamous-like MADS-box protein AGL62
TrEMBLA0A2K3M5S80.0A0A2K3M5S8_TRIPR; MADS-box transcription factor (Fragment)
STRINGAET025831e-101(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-47AGAMOUS-like 62