PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16603
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 291aa    MW: 33526.6 Da    PI: 6.948
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16603genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.41.1e-21142202259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                dDg++WrKYGqK ++++++ rsYYrC++    +C++ k+v++++++p +  +tY g+H+++
  Tp57577_TGAC_v2_mRNA16603 142 DDGHTWRKYGQKRITNAKYFRSYYRCSHMddqHCEAMKHVQQTQNNPPLYRTTYYGHHTCQ 202
                                8***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-23128202IPR003657WRKY domain
SuperFamilySSF1182907.59E-22136202IPR003657WRKY domain
PROSITE profilePS5081119.015136204IPR003657WRKY domain
SMARTSM007741.9E-30141203IPR003657WRKY domain
PfamPF031068.1E-22142202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MENLSWHTNG KKAMEKELLR GRDMANQLLE VLTFDDKTNI REMMKGSNLK SSSSKVLPLI  60
VAEDLVREVL KSFTNTLLLL NNNQDSNDGR DFSFSMNCHK LEEDLDGAYK KFKTLNTKNP  120
KGSNKRKSSA PTWEKTTSIL IDDGHTWRKY GQKRITNAKY FRSYYRCSHM DDQHCEAMKH  180
VQQTQNNPPL YRTTYYGHHT CQSSFHSDLN FESNLSSDDS SILLSFDNNI LSKQEQPFPP  240
LPLLASVNGD PKEVIHDDHF IPNQLCTSEN LQLCDFDVYF DYLRHATVQL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-18141202869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16603
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596299.11e-149probable WRKY transcription factor 62
TrEMBLG7IR291e-147G7IR29_MEDTR; Cysteine-tRNA ligase
STRINGAES665501e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.13e-25WRKY DNA-binding protein 62