PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA16468 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 107aa MW: 12092.5 Da PI: 8.0568 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 32.2 | 3.6e-10 | 50 | 97 | 1 | 44 |
FAR1 1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreee 44 +fY +YA+++GF +r ++k+ k+++++ + ++vC+k+g+++ + Tp57577_TGAC_v2_mRNA16468 50 DFYGNYAYHTGFCIRSMLKSKNnsqnKKSDKVHDVRYVCNKQGFKKGS 97 6***********9997655544445699999*************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-7 | 50 | 96 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MDSISTSSEI EQLTVETSSL IHADSSQCYS PSNKESWESL VFESIKEIED FYGNYAYHTG 60 FCIRSMLKSK NNSQNKKSDK VHDVRYVCNK QGFKKGSLLN PKNRPT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA16468 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU467812 | 1e-126 | CU467812.5 M.truncatula DNA sequence from clone MTH2-6G22 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013441754.1 | 7e-61 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K3LGX9 | 1e-72 | A0A2K3LGX9_TRIPR; FAR1-related protein (Fragment) | ||||
STRING | AES76326 | 2e-58 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14214 | 2 | 15 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA16468 |