PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16468
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 107aa    MW: 12092.5 Da    PI: 8.0568
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16468genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.23.6e-105097144
                       FAR1  1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreee 44
                               +fY +YA+++GF +r   ++k+    k+++++ + ++vC+k+g+++ +
  Tp57577_TGAC_v2_mRNA16468 50 DFYGNYAYHTGFCIRSMLKSKNnsqnKKSDKVHDVRYVCNKQGFKKGS 97
                               6***********9997655544445699999*************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-75096IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MDSISTSSEI EQLTVETSSL IHADSSQCYS PSNKESWESL VFESIKEIED FYGNYAYHTG  60
FCIRSMLKSK NNSQNKKSDK VHDVRYVCNK QGFKKGSLLN PKNRPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16468
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4678121e-126CU467812.5 M.truncatula DNA sequence from clone MTH2-6G22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013441754.17e-61protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K3LGX91e-72A0A2K3LGX9_TRIPR; FAR1-related protein (Fragment)
STRINGAES763262e-58(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14214215