PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16407
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 165aa    MW: 19130 Da    PI: 9.6088
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16407genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.78.1e-151452644
                               HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                     SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                               +s+r  tf kR+ g++KK +ELS+LC++e++ ii+ +++
  Tp57577_TGAC_v2_mRNA16407 14 NSKRRETFRKRKFGLMKKVNELSTLCGIEACAIIYDQNN 52
                               678889****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.105152IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-20160IPR002100Transcription factor, MADS-box
CDDcd002662.94E-27285No hitNo description
PRINTSPR004041.8E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-23394IPR002100Transcription factor, MADS-box
PfamPF003193.4E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MARKKLKLAY ITCNSKRRET FRKRKFGLMK KVNELSTLCG IEACAIIYDQ NNPQAEVWPS  60
DSGVKSVLSR FGSLSELERN KKKVDQEVFL RESIEKACDQ LNKKKEENKK KEMANIIDPY  120
IHNGELNSNL MSKYDFNDWS SFINENLKEI DRKMKGMQIE AQDP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKLKLAYITCNSKRRETFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16407
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012570901.21e-73agamous-like MADS-box protein AGL80
RefseqXP_013456110.12e-74agamous-like MADS-box protein AGL80
TrEMBLA0A2K3MSM71e-115A0A2K3MSM7_TRIPR; Agamous-like mads-box protein agl80-like
STRINGXP_004499447.15e-73(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1629138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.24e-33M-type_MADS family protein