PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA16404 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26422 Da PI: 4.9521 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.5 | 4.9e-08 | 78 | 125 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f L +l + + + +K +iL A++ +++L Tp57577_TGAC_v2_mRNA16404 78 TKACREKLRREKLNERFCDLSAVLDPG---RPVRTDKPAILDDAIRVLNQL 125 7889********************997...88****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-11 | 69 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.112 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.04E-6 | 78 | 130 | No hit | No description |
Pfam | PF00010 | 2.0E-5 | 78 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-6 | 80 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-9 | 82 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDSYELLQNI DSLDFLDYSN FIDPSPPTDF LWSNPSASTE IDFASVSTEI DIPSGAVACQ 60 EENTRKRGRA ESCYKSGTKA CREKLRREKL NERFCDLSAV LDPGRPVRTD KPAILDDAIR 120 VLNQLKTEAQ ELKETNEKLL EEIKCLKAEK NELREEKLVL KADKEKIEKQ LKTMPPPISP 180 AGFMPPHPMA AAYQPGMNKM AVYPNYGYIP MWQYLPQSAR DTSQDHELRP PAA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA16404 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN800447 | 0.0 | JN800447.1 Medicago truncatula basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590056.1 | 1e-141 | transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 2e-78 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A2K3MRN5 | 1e-165 | A0A2K3MRN5_TRIPR; Transcription factor bHLH104-like protein | ||||
STRING | AES60307 | 1e-140 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8179 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 5e-61 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA16404 |