PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16319
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TALE
Protein Properties Length: 344aa    MW: 39561.2 Da    PI: 5.9521
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16319genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.4e-072813132254
                                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 +yp++e++++L +++gL+ +q+ +WF N+R +
  Tp57577_TGAC_v2_mRNA16319 281 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 313
                                59*****************************87 PP
2ELK30.67.6e-11234255122
                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                ELKh+L+++Y+++++++++E++
  Tp57577_TGAC_v2_mRNA16319 234 ELKHELKQGYKEKIVDVREEIL 255
                                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.5E-1868112IPR005540KNOX1
PfamPF037901.9E-1770111IPR005540KNOX1
SMARTSM012566.9E-25119175IPR005541KNOX2
PfamPF037917.6E-18128174IPR005541KNOX2
PfamPF037894.4E-7234255IPR005539ELK domain
PROSITE profilePS512139.83234254IPR005539ELK domain
SMARTSM011888.9E-4234255IPR005539ELK domain
PROSITE profilePS5007111.596254317IPR001356Homeobox domain
SMARTSM003891.8E-10256321IPR001356Homeobox domain
SuperFamilySSF466897.7E-16256320IPR009057Homeodomain-like
CDDcd000863.77E-10257316No hitNo description
Gene3DG3DSA:1.10.10.606.9E-25261317IPR009057Homeodomain-like
PfamPF059208.9E-18274313IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAFQEHLQHE IAYQRFTEEE DEERVPWLNN NNSVNARQQN FMHLEPERRE KSMDRNRSEN  60
NCETEELREY KAEILGHPLY DQLLSAHVSC LRIATPVDQL PRIDAQLQQS QRVLQKYSSV  120
GIGNMDPKEL DHFMTHYVLL LCAFKEQLQQ HVRVHAMEAV MACWDLEQSL QSLTGVSSGE  180
GTGATMSDDE EEQAESNAKL YEGSGFDGGV DTLGFGPLVP TETERSLMER VRLELKHELK  240
QGYKEKIVDV REEILRKRRA GKLPGDTTSL LKAWWQSHSK WPYPTEEDKA RLVQETGLQL  300
KQINNWFINQ RKRNWHANSP SSSTSKTKRK SSAGGETSNQ SFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16319
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1386280.0BT138628.1 Medicago truncatula clone JCVI-FLMt-17B3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637800.10.0homeobox protein knotted-1-like 4 isoform X1
SwissprotP480001e-160KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0H3WB720.0A0A0H3WB72_PEA; Class II knotted-1-like 9 homeobox transcription factor
STRINGAES917220.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-156KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]