PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1597
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 315aa    MW: 35867.1 Da    PI: 7.3017
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1597genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-083479346
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                              +WT+eE +l+ +a + + ++   +W ++a++++ g+t  +++  ++ 
  Tp57577_TGAC_v2_mRNA1597 34 KWTQEENKLFENALAYYDKDtpdRWIRVAEMIP-GKTVGDVIKQYRE 79
                              8********************************.******9999986 PP
2Myb_DNA-binding461.2e-14141185347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Tp57577_TGAC_v2_mRNA1597 141 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 185
                               8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.5483084IPR017884SANT domain
SMARTSM007179.8E-83183IPR001005SANT/Myb domain
SuperFamilySSF466893.04E-123388IPR009057Homeodomain-like
CDDcd001675.85E-63480No hitNo description
PfamPF002491.1E-63479IPR001005SANT/Myb domain
PROSITE profilePS5129420.205134190IPR017930Myb domain
SuperFamilySSF466891.73E-17135189IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-18137189IPR006447Myb domain, plants
SMARTSM007173.5E-13138188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-12138185IPR009057Homeodomain-like
PfamPF002494.2E-12141185IPR001005SANT/Myb domain
CDDcd001671.29E-10141186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MMLSRTMNRG IEVLSPASYI QNSNWLFEEN KGSKWTQEEN KLFENALAYY DKDTPDRWIR  60
VAEMIPGKTV GDVIKQYREL EEDVCVIEAG LIPVPGYTTS SFTLDWDNNQ GFDDFKQFCS  120
VGEKRGGLTR SSEQERKKGV PWTEEEHRQF LLGLKKYGKG DWRNISRNFV TTRTPTQVAS  180
HAQKYFIRQV SGGKDKRRSS IHDITVVNLQ ETKSPSSDSN NPSSPDHLVN TANQPRNHNL  240
SGMVKQEYDL KIPDEEGMPF VFNSTKGNMY VAPLCGISSQ ESKSPGHNIL RGTHHGFQFS  300
PFDTIFQMQS MQHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1632110886RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684780.0EF468478.1 Medicago truncatula MYB transcription factor MYB33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449121.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-107DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A392MB460.0A0A392MB46_9FABA; Transcription factor DIVARICATA-like
STRINGXP_004492415.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-119MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]