PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA15960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 139aa MW: 15323.3 Da PI: 5.9839 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 50.1 | 8.3e-16 | 32 | 81 | 51 | 100 |
DUF260 51 eeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++ r da++slvyeA++r+rdPvyG++g i++lqqq+++l el++++ee Tp57577_TGAC_v2_mRNA15960 32 PKARADAANSLVYEANVRLRDPVYGCMGAISSLQQQIQSLLGELNVIREE 81 6779****************************************999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.43 | 1 | 82 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-13 | 32 | 79 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 139 aa Download sequence Send to blast |
YSLVENGFYV VGIPIIPTII TPEDVKSRLE GPKARADAAN SLVYEANVRL RDPVYGCMGA 60 ISSLQQQIQS LLGELNVIRE EIHKYKLMEA NMIPSTEDVS IASSTLTIYN NTTNASFFHL 120 HTTTKSYHPP SNSEVDKH* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA15960 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CR938710 | 2e-98 | CR938710.1 Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616758.1 | 2e-39 | LOB domain-containing protein 15 | ||||
TrEMBL | G7KH28 | 4e-38 | G7KH28_MEDTR; LOB domain protein | ||||
STRING | AES99716 | 6e-39 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40470.1 | 4e-18 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA15960 |