PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA15924 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 114aa MW: 12513 Da PI: 4.2543 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 53.7 | 5.9e-17 | 2 | 53 | 49 | 100 |
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l el++++ee Tp57577_TGAC_v2_mRNA15924 2 VPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQIQSLLGELNVIREE 53 7899******************************************999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.742 | 1 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.5E-15 | 2 | 51 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 114 aa Download sequence Send to blast |
EVPENQRADA ANSLVYEANV RLRDPVYGCM GAISSLQQQI QSLLGELNVI REEIHKYKLM 60 EANMIPSSED LSIASSTLPS TTSLPMLPSS IYTQQTNPTN YSSISSDHIS YFD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-17 | 1 | 68 | 58 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-17 | 1 | 68 | 58 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA15924 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CR938710 | 1e-131 | CR938710.1 Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616758.1 | 6e-69 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 3e-24 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | G7KH28 | 1e-67 | G7KH28_MEDTR; LOB domain protein | ||||
STRING | AES99716 | 2e-68 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-21 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA15924 |
Publications ? help Back to Top | |||
---|---|---|---|
|