PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA15806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | HB-other | ||||||||
Protein Properties | Length: 189aa MW: 22398.7 Da PI: 8.2136 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.2 | 4.8e-12 | 3 | 38 | 21 | 56 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++p++++r++LA++lgL+ +qVk+W qN+++ +k Tp57577_TGAC_v2_mRNA15806 3 ECNHPDEAQRRQLAEELGLQPKQVKYWLQNKKTMMK 38 6899****************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.985 | 1 | 40 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.12E-8 | 2 | 40 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 3 | 40 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.04E-9 | 3 | 46 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.7E-9 | 3 | 38 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MKECNHPDEA QRRQLAEELG LQPKQVKYWL QNKKTMMKNQ YDKQNNNNLR LENERLRSEN 60 LLMKEALKVI KCEPCGGPPF PEEEHQHYMH KMQRENEQFK REYDHICSNF PFLCTYMLKI 120 VFWGVFFWKP DSEHGCNWFA HLARLESSLS EVPVLRILAG SFECSPSEGN SCLVKIRRYR 180 ARIAFGEL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA15806 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486568.1 | 4e-42 | homeobox-leucine zipper protein HDG11-like | ||||
TrEMBL | A0A2Z6MI78 | 6e-47 | A0A2Z6MI78_TRISU; Uncharacterized protein | ||||
STRING | XP_004486568.1 | 1e-41 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03260.1 | 3e-15 | homeodomain GLABROUS 8 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA15806 |