PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15721
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 354aa    MW: 40406.9 Da    PI: 6.2528
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15721genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-0933102246
                                SSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqk 46 
                                g +T+eEd ++  +    G++                           W+ Ia+ ++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA15721  33 GGFTEEEDNIICSLYISIGSRslsilkflllynillfvfflchknlsMWSIIAAQLP-GRTDNDIKNYWNT 102
                                569******************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.542126IPR017877Myb-like domain
SuperFamilySSF466891.63E-111230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-121238IPR009057Homeodomain-like
PROSITE profilePS5129412.29627108IPR017930Myb domain
SMARTSM007174.6E-531106IPR001005SANT/Myb domain
PfamPF002494.0E-733102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-1639105IPR009057Homeodomain-like
SuperFamilySSF466891.63E-1176105IPR009057Homeodomain-like
CDDcd001671.27E-481102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDNNYKKFAG LKRCGKSCRL RWLNYLRPNI KHGGFTEEED NIICSLYISI GSRSLSILKF  60
LLLYNILLFV FFLCHKNLSM WSIIAAQLPG RTDNDIKNYW NTRLKKKLLG KRKQSNNNNN  120
NNNNNLMNQK DTNGIDENSS YSNSLSSSAL ERLQLHMQLQ SLQNPFSFYN NNPASLVWPK  180
LHPSQEKMIQ ISLQNSNNII NPMMQNVFTS PHVDVLENIN IPLENNNINF NATGNNGNNN  240
NNYNSMHSSS SVAPRGEGVE MKSSTNEGIQ QLENELDEIL NNRNINTTTM EDEFDCFRDI  300
NNNDGSKDVQ SMIWWSNDSG ETTKSGSSNS WDSSTNLMQD QGMFQDYELG YTM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15721
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743531e-141AC174353.16 Medicago truncatula chromosome 8 clone mth2-8a15, complete sequence.
GenBankAC1827411e-141AC182741.16 Medicago truncatula clone mth2-40e20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610162.11e-137transcription factor MYB36
TrEMBLG7JD211e-136G7JD21_MEDTR; Myb transcription factor
STRINGAES923591e-136(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-48myb domain protein 36