PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15571
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 582aa    MW: 65261 Da    PI: 6.418
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15571genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.92e-1382115811374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++ L++cA+a++++d  +aq+l+ +l++++s +g+p+qRl ay++e+L arl+ s+s++yk+l+++e +   s+e l++++++
  Tp57577_TGAC_v2_mRNA15571 211 LKHILTACAKAIADNDYLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSASGSSIYKSLRCKEPE---SAELLSYMNIL 291
                                6899*****************************************************************9...9********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                +ev+P++kf+++ aN aI ea+++e rvHiiDf+isqG QW++L+qa+a+Rp+gpp++RiTg+++p+s   +   l+ +++rL 
  Tp57577_TGAC_v2_mRNA15571 292 YEVCPYFKFGYMSANGAIAEAMKNEARVHIIDFQISQGSQWISLIQAFAARPGGPPHIRITGIDDPTSAyaRGGGLHIVEKRLL 375
                                *******************************************************************9999999********** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                k+A++++vpfef++ +a +  d++l++L v+pgEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+
  Tp57577_TGAC_v2_mRNA15571 376 KLAQHFKVPFEFHA-AAISGCDVQLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNT 458
                                **************.88899**************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + F+ rfle+++yy+a+f+s++++lpre++eri+vE+++l+r++vn++aceg er+erhe l+kW++r+ +aGF+p+pls+ ++
  Tp57577_TGAC_v2_mRNA15571 459 AAFFPRFLETMDYYTAMFESIDVTLPREHKERINVEQHCLARDLVNIIACEGVERVERHELLGKWKSRFAMAGFTPYPLSSLVN 542
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 ++k ll++++++ yr++e++g+l+lgW++r Lv+ +aW+
  Tp57577_TGAC_v2_mRNA15571 543 GTIKKLLENYSDR-YRLQEKDGALYLGWMNRDLVASCAWK 581
                                ***********66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.015185562IPR005202Transcription factor GRAS
PfamPF035146.8E-136211581IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
LCLVFLPQKQ ITDNLKSAQK NELAVETPVR FFIIDSTMQA SEQHRSSSMY YQPLQQMEAY  60
CLPQYRNLNH QLYNNDGGHR TQLSAPSSSD LYYCTLESSS AAGSLAVYNS PSTVSFSPND  120
SPMSQQDSQS YPPDKYHSPD NTYGSPMSGS CITEDLSSFK HKLRELENVM LGPDSDNLDS  180
YDSAMSNGTN FGSLEMDSWR QTMVAISSKN LKHILTACAK AIADNDYLMA QWLMDELRQM  240
VSVSGEPIQR LGAYMLEGLV ARLSASGSSI YKSLRCKEPE SAELLSYMNI LYEVCPYFKF  300
GYMSANGAIA EAMKNEARVH IIDFQISQGS QWISLIQAFA ARPGGPPHIR ITGIDDPTSA  360
YARGGGLHIV EKRLLKLAQH FKVPFEFHAA AISGCDVQLH NLGVRPGEAL AVNFAFMLHH  420
MPDESVSTQN HRDRLLRLVK SLSPKVVTLV EQESNTNTAA FFPRFLETMD YYTAMFESID  480
VTLPREHKER INVEQHCLAR DLVNIIACEG VERVERHELL GKWKSRFAMA GFTPYPLSSL  540
VNGTIKKLLE NYSDRYRLQE KDGALYLGWM NRDLVASCAW K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-592155818375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15571
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9550060.0CR955006.2 Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617966.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2K3L2A40.0A0A2K3L2A4_TRIPR; SCARECROW-like protein transcription factor PAT1-like protein
STRINGAET009250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]